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[186415_at]

Description R07C3.13 /REP_DB=WormBase Gene ID /WP=CE12546 /TR=O16772 /GB=AAB66242.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 89      4grp_total > 36      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 50.4
(0)
A 		90.1
(3)
A 		15.6
(-2.6)
A 		9.6
(-3)
A 		81
B 30.2
(-0.2)
A 		15.7
(-2.7)
A 		49.4
(3)
A 		13.7
(-3)
A 		36
C 44.5
(-0.4)
A 		18.7
(-2.3)
A 		8.7
(-3)
A 		92.2
(3)
A 		84
avr 41.7
(3) 		41.5
(2.9) 		24.6
(-3) 		38.5
(1.9) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 15
(-2.8)
A 		50.4
(0.1)
A 		71.1
(1.9)
A 		12.5
(-3)
A 		84.7
(3)
A 		67.9
(1.6)
A 		72
B 31.7
(-0.8)
A 		54.8
(2.3)
A 		19.9
(-2.3)
A 		14.6
(-3)
A 		21.5
(-2.1)
A 		60.2
(3)
A 		46
C 60.2
(1.6)
A 		47.6
(0.4)
A 		61.6
(1.7)
A 		12.6
(-3)
A 		75
(3)
A 		37.9
(-0.6)
A 		62
avr 35.6
(-0.2) 		50.9
(1.8) 		50.9
(1.8) 		13.2
(-3) 		60.4
(3) 		55.3
(2.4) 		47
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 18.4
(2.6)
A 		19.5
(3)
A 		4.1
(-2.1)
A 		1.4
(-3)
A 		18
B 9.6
(1.7)
A 		3.9
(-2.3)
A 		11.4
(3)
A 		2.9
(-3)
A 		9
C 14.7
(2.6)
A 		5.4
(-1.8)
A 		3
(-3)
A 		15.5
(3)
A 		13
avr 14.2
(3) 		9.6
(-0.5) 		6.2
(-3) 		6.6
(-2.7) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 2.8
(-3)
A 		17.9
(1)
A 		15.5
(0.3)
A 		3.2
(-2.9)
A 		25.6
(3)
A 		16.5
(0.6)
A 		23
B 11
(-0.7)
A 		18.2
(1.6)
A 		4.8
(-2.7)
A 		3.9
(-3)
A 		8.7
(-1.5)
A 		22.5
(3)
A 		19
C 22.3
(2.4)
A 		14.5
(0.3)
A 		15.7
(0.6)
A 		2.5
(-3)
A 		24.3
(3)
A 		12.7
(-0.2)
A 		22
avr 12
(0.2) 		16.9
(2) 		12
(0.2) 		3.2
(-3) 		19.5
(3) 		17.2
(2.2) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186415_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4054
Sequence Type Exemplar sequence
Representative Public ID R07C3.13 NCBI
Target Description R07C3.13 /REP_DB=WormBase Gene ID /WP=CE12546 /TR=O16772 /GB=AAB66242.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061452(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061452 NCBI Caenorhabditis elegans R07C3.13 (R07C3.13) mRNA, complete cds. 11/11 None
R07C3.13 ENSEMBL cdna:known chromosome:CEL140:II:926537:927865:-1 gene:R07C3.13 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000022241 4/11 Cross Hyb Matching Probes None
GENEFINDER00000022251 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:926535-927864(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R07C3.13
Entrez Gene 187672 Entrez gene
SwissProt O16772 EMBL-EBI
WormBase CE12546 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB66242 Hypothetical protein R07C3.13 [Caenorhabditis elegans] ref|NP_493853.1| R07C3.13 [Caenorhabditis elegans] 1.0E-144
Sequence
Target Sequence 
>C. ELEGANS:186415_AT
ggcttctctcattttctattacagttgcatcttccgctgaagaattgaaggctggcggtg
acatggacgcgaagatgaaagaaatgcaggaacaatcgaagaaatcaatggaggagatga
gtaaggggttcggggtgaaaatcgagttgaatgagaagaccactcccacaatggtggaac
aacacgtcaaagattttcgagacaacattaaaagtgtattcaagctcactaatgtgcaaa
acttgactatcgatgaatcgctcagagcgaaatcagataagatgtcatgcgaggaccgcg
gaaacttttacttaaccaactcaaaaaaacatgcttctgagttgcaaaaattcttgcttt
gtttgtttaattgttttcactggatcaacccggttcaaactcaacttgggtgctctatta
agaagtgtgccgctgagtatatagttatttgcctccttggcccaaatgaagaaatcaagg
cttctgactataaatcatccgatgatttcaaagcgggtaaagctgaagctgccgaaatcg
aagctaaatcggaagcaaatacttcgttctccacca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCTTCTCTCATTTTCTATTACAGT 378 537 299 Antisense
ATTACAGTTGCATCTTCCGCTGAAG 708 11 316 Antisense
GAAGGCTGGCGGTGACATGGACGCG 512 333 345 Antisense
GAATGAGAAGACCACTCCCACAATG 185 331 447 Antisense
GTGTATTCAAGCTCACTAATGTGCA 111 485 512 Antisense
TGCGAGGACCGCGGAAACTTTTACT 455 583 586 Antisense
TTTTCACTGGATCAACCCGGTTCAA 107 673 672 Antisense
GGTTCAAACTCAACTTGGGTGCTCT 22 505 690 Antisense
GTATATAGTTATTTGCCTCCTTGGC 361 453 735 Antisense
TTTGCCTCCTTGGCCCAAATGAAGA 125 669 746 Antisense
GAAGCAAATACTTCGTTCTCCACCA 213 339 850 Antisense
Sequence Source Affymetrix Proprietary Database