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[186413_at]

Description H20E11.1 /REP_DB=WormBase Gene ID /WP=CE19492 /TR=Q9TYY9 /GB=AAC68973.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 33      6grp_high1_10_10 > 22      4grp_highest_8_8 > 49      4grp_high_8_8 > 41      6grp_highest_nonorm > 70      6grp_total > 22      4grp_total > 54      6grp_highest_sub > 02      6grp_high1_sub > De      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 321
1 2 3 4 range
A 355.7
(3)
P 		196.7
(-0.8)
P 		174.4
(-1.4)
P 		107.3
(-3)
P 		248
B 343.7
(3)
P 		225.9
(0.2)
P 		242
(0.6)
P 		91.7
(-3)
P 		252
C 412.6
(3)
P 		293.5
(0.3)
P 		188.5
(-2)
P 		144.8
(-3)
P 		268
avr 370.7
(3) 		238.7
(-0.1) 		201.6
(-1) 		114.6
(-3) 		256

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 306
1 2 3 4 5 6 range
A 314.6
(1.9)
P 		355.6
(2.9)
P 		360.9
(3)
P 		287.3
(1.2)
P 		224.5
(-0.4)
P 		117.6
(-3)
P 		243
B 328.1
(1.4)
P 		410.7
(3)
P 		353.2
(1.9)
P 		324.5
(1.3)
P 		211.6
(-0.9)
P 		104.5
(-3)
P 		306
C 289.1
(2.7)
P 		296.9
(3)
P 		231.7
(0.9)
P 		263.6
(1.9)
P 		197.7
(-0.2)
P 		112.2
(-3)
P 		185
avr 310.6
(1.9) 		354.4
(3) 		315.3
(2) 		291.8
(1.5) 		211.3
(-0.5) 		111.4
(-3) 		243
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 121
1 2 3 4 range
A 129.5
(3)
P 		42.7
(-1.6)
P 		45.6
(-1.4)
P 		15.7
(-3)
P 		114
B 109.6
(3)
P 		55.8
(-0.6)
P 		56.1
(-0.6)
P 		19.5
(-3)
P 		90
C 136.6
(3)
P 		84.4
(0.2)
P 		65.7
(-0.8)
P 		24.4
(-3)
P 		112
avr 125.2
(3) 		61
(-0.7) 		55.8
(-1) 		19.9
(-3) 		105

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 108
1 2 3 4 5 6 range
A 58
(-1.2)
P 		126.5
(3)
P 		78.6
(0.1)
P 		72.9
(-0.3)
P 		67.7
(-0.6)
P 		28.6
(-3)
P 		98
B 114.2
(1.6)
P 		136.7
(3)
P 		85.8
(-0.1)
P 		85.9
(-0.1)
P 		86
(-0.1)
P 		39
(-3)
P 		98
C 107.2
(3)
P 		90.6
(1.6)
P 		59
(-1.2)
P 		53
(-1.7)
P 		64
(-0.7)
P 		37.6
(-3)
P 		70
avr 93.1
(1.2) 		117.9
(3) 		74.5
(-0.1) 		70.6
(-0.4) 		72.6
(-0.3) 		35.1
(-3) 		83
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186413_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9721
Sequence Type Exemplar sequence
Representative Public ID H20E11.1 NCBI
Target Description H20E11.1 /REP_DB=WormBase Gene ID /WP=CE19492 /TR=Q9TYY9 /GB=AAC68973.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028088(11), NM_001028089(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028088 NCBI Caenorhabditis elegans H20E11.1a (H20E11.1) mRNA, complete cds. 11/11 None
NM_001028089 NCBI Caenorhabditis elegans H20E11.1b (H20E11.1) mRNA, complete cds. 10/11 None
SNAP00000015310 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6831006:6832574:1 9/11 None
GENEFINDER00000015311 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6830115:6833223:1 11/11 None
H20E11.1a ENSEMBL cdna:known chromosome:CEL140:IV:6830211:6833424:1 gene:H20E11.1 11/11 None
H20E11.1b ENSEMBL cdna:known chromosome:CEL140:IV:6831760:6833223:1 gene:H20E11.1 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6830223-6833229(+) 100.0 100.0
Public Domain and Genome References
Ensembl H20E11.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC68973 Hypothetical protein H20E11.1a [Caenorhabditis elegans] ref|NP_001023259.1| H20E11.1a [Caenorhabditis elegans] 0.0
blast AAC68973 Hypothetical protein H20E11.1a [Caenorhabditis elegans] ref|NP_001023259.1| H20E11.1a [Caenorhabditis elegans] 1.0E-168
blast CAE61749 Hypothetical protein CBG05703 [Caenorhabditis briggsae] 1.0E-147
blast CAE61749 Hypothetical protein CBG05703 [Caenorhabditis briggsae] 1.0E-93
blast AAA96104 Hypothetical protein C14C11.4 [Caenorhabditis elegans] ref|NP_504488.1| C14C11.4 [Caenorhabditis elegans] 7.0E-44
Protein Domains
Database ID Description E-Value
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 1.9E-30
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 1.9E-30
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001023259.1 1 452-474
NP_001023260.1 1 53-75
H20E11.1a 1 452-474
H20E11.1b 1 53-75
GENEFINDER00000015311 2 15-37,467-489
Sequence
Target Sequence 
>C. ELEGANS:186413_AT
aagacgccaaccaacttgtactgaagaaaatgggaacattagagaatgaaaactgtaaag
cttatgctgatactggaactccaagttctccatcgaataccttaattgatttcaaatcag
atgcatattcacttcctcagctctttccttatccgtatttctctataattgtcgagaact
gtgatgtcaatttcaactttagtacaactttaccatcaaactattataccatagatagtg
aaagaaatggttttattttttcgcctacattcttcaatagtgaggcagataatggatata
ttaatatcacttttgcgtacactggtgatgagaaagtgcaattcgctgtcgacgtggata
gagtgacaatgggaaattcaaactcccagttggatataaacatttatgatagcaaatgga
atccaactttgagtactgtaataagtggtaaccaagaaggaactcgttcacgagcaaatg
gagtatatttgaatgttcgaatgacaagtgctacatctacaaaactttattggagtctaa
cttccttttctgtgtctattttcaatcttcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGACGCCAACCAACTTGTACTGAA 644 153 842 Antisense
GCTTATGCTGATACTGGAACTCCAA 216 305 901 Antisense
GAACTCCAAGTTCTCCATCGAATAC 569 347 917 Antisense
CAGATGCATATTCACTTCCTCAGCT 32 207 959 Antisense
TTTCCTTATCCGTATTTCTCTATAA 11 671 985 Antisense
GTACAACTTTACCATCAAACTATTA 127 461 1043 Antisense
TATTTTTTCGCCTACATTCTTCAAT 399 661 1095 Antisense
TAATATCACTTTTGCGTACACTGGT 47 635 1143 Antisense
AGTGCAATTCGCTGTCGACGTGGAT 442 59 1176 Antisense
TGGAGTCTAACTTCCTTTTCTGTGT 387 549 1372 Antisense
TTCTGTGTCTATTTTCAATCTTCAA 377 695 1389 Antisense
Sequence Source Affymetrix Proprietary Database