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[186412_at]

Description ZK1240.1 /REP_DB=WormBase Gene ID /WP=CE24717 /TR=O16684 /GB=AAB66140.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 52      4grp_total > 46      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 96
1 2 3 4 range
A 97.8
(3)
A 		4.2
(-3)
A 		8.5
(-2.7)
A 		10.7
(-2.6)
A 		94
B 99.7
(3)
A 		80.3
(1.8)
A 		34.4
(-1.2)
A 		5.7
(-3)
A 		94
C 64.5
(3)
A 		31.1
(-0.8)
A 		11.1
(-3)
A 		13.1
(-2.8)
A 		53
avr 87.3
(3) 		38.5
(-0.8) 		18
(-2.4) 		9.8
(-3) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 148
1 2 3 4 5 6 range
A 31
(-1.9)
A 		93.9
(0.6)
A 		152.1
(3)
A 		95.4
(0.7)
A 		52.7
(-1)
A 		4.6
(-3)
A 		148
B 70.4
(-0.9)
A 		103.6
(1.3)
A 		127.6
(2.8)
A 		130.8
(3)
A 		74.3
(-0.6)
A 		36.7
(-3)
A 		94
C 41.6
(-2.4)
A 		99.5
(0.7)
A 		141.6
(3)
A 		37.5
(-2.6)
A 		38.6
(-2.5)
A 		29.8
(-3)
A 		112
avr 47.7
(-1.8) 		99
(0.9) 		140.4
(3) 		87.9
(0.3) 		55.2
(-1.4) 		23.7
(-3) 		117
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 35.6
(3)
A 		0.9
(-3)
A 		2.2
(-2.8)
A 		1.6
(-2.9)
A 		35
B 31.8
(3)
A 		19.8
(0.6)
A 		8
(-1.7)
A 		1.2
(-3)
A 		31
C 21.4
(3)
A 		8.9
(-0.9)
A 		3.9
(-2.5)
A 		2.2
(-3)
A 		19
avr 29.6
(3) 		9.9
(-1.2) 		4.7
(-2.4) 		1.7
(-3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 5.7
(-2.1)
A 		33.4
(3)
A 		33.1
(2.9)
A 		24.2
(1.3)
A 		15.9
(-0.3)
A 		1.1
(-3)
A 		32
B 24.5
(0.1)
A 		34.5
(2.9)
A 		31
(1.9)
A 		34.7
(3)
A 		30.2
(1.7)
A 		13.7
(-3)
A 		21
C 15.4
(-1.3)
A 		30.4
(1.8)
A 		36
(3)
A 		7.5
(-3)
A 		12.5
(-1.9)
A 		10
(-2.5)
A 		29
avr 15.2
(-1.4) 		32.8
(2.9) 		33.4
(3) 		22.1
(0.3) 		19.5
(-0.3) 		8.3
(-3) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186412_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5976
Sequence Type Exemplar sequence
Representative Public ID ZK1240.1 NCBI
Target Description ZK1240.1 /REP_DB=WormBase Gene ID /WP=CE24717 /TR=O16684 /GB=AAB66140.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061842(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061842 NCBI Caenorhabditis elegans ZK1240.1 (ZK1240.1) mRNA, complete cds. 11/11 None
SNAP00000039228 ENSEMBL cdna:SNAP chromosome:CEL140:II:2325347:2331643:1 11/11 None
GENEFINDER00000039233 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2329532:2331643:1 11/11 None
ZK1240.1 ENSEMBL cdna:known chromosome:CEL140:II:2329356:2331793:1 gene:ZK1240.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2329379-2331714(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK1240.1
Entrez Gene 173589 Entrez gene
SwissProt O16684 EMBL-EBI
WormBase CE33494 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast D88072 protein ZK1240.1 [imported] - Caenorhabditis elegans 1.0E-161
blast AAB66140 Hypothetical protein ZK1240.1 [Caenorhabditis elegans] ref|NP_494243.2| ZK1240.1 [Caenorhabditis elegans] 1.0E-154
blast D88072 protein ZK1240.1 [imported] - Caenorhabditis elegans 1.0E-147
blast AAB66140 Hypothetical protein ZK1240.1 [Caenorhabditis elegans] ref|NP_494243.2| ZK1240.1 [Caenorhabditis elegans] 1.0E-147
blast D88072 protein ZK1240.1 [imported] - Caenorhabditis elegans 7.0E-96
blast AAB66145 Hypothetical protein ZK1240.2 [Caenorhabditis elegans] ref|NP_494241.2| ZK1240.2 [Caenorhabditis elegans] 9.0E-85
blast AAB66145 Hypothetical protein ZK1240.2 [Caenorhabditis elegans] ref|NP_494241.2| ZK1240.2 [Caenorhabditis elegans] 7.0E-83
Protein Domains
Database ID Description E-Value
Pfam IPR001841 EMBL-EBI Zn-finger, RING 1.8E-10
Sequence
Target Sequence 
>C. ELEGANS:186412_AT
aactgctcctccgacgaaaagctaatgtgccgaacttgcgaggagtttggagttcacgcc
ggacactcgaagggcctcctacagacggaagctttgaaattgagaacgttgctcaaagat
aagcttttaaagtccgaagatcagattgttcaaattgacaagaacattgaagaggttgac
agcgcccagcaaacaaatcaagtagatgggaaggtgtttcaagataaaaaagatttgata
tccgtctactatacctcaatacgagagaccttagatgcccaggaagcccttgcaaatcaa
aaactacgcgaaattgcagaatccaattcagctagcaataaattactactagaagaattg
tcggaatccctggaaacccagaaattgaaaaacgagaaattaaagtcgtttctgggaatg
agcaacgcggatttgttagctctaaattcagaaattcagctctgggatgactcggaaaat
acagaagttgagcctattcagtttgatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTGCTCCTCCGACGAAAAGCTAA 565 141 436 Antisense
AGCTAATGTGCCGAACTTGCGAGGA 482 79 455 Antisense
GGCCTCCTACAGACGGAAGCTTTGA 672 539 508 Antisense
TTGAAGAGGTTGACAGCGCCCAGCA 196 703 602 Antisense
GACAGCGCCCAGCAAACAAATCAAG 330 367 613 Antisense
ATATCCGTCTACTATACCTCAATAC 355 21 673 Antisense
AATACGAGAGACCTTAGATGCCCAG 566 171 693 Antisense
TTAGATGCCCAGGAAGCCCTTGCAA 195 679 706 Antisense
GCAACGCGGATTTGTTAGCTCTAAA 495 319 857 Antisense
AATTCAGCTCTGGGATGACTCGGAA 154 177 888 Antisense
GAAGTTGAGCCTATTCAGTTTGATG 267 337 919 Antisense
Sequence Source Affymetrix Proprietary Database