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[186411_at]

Description C34D10.1 /REP_DB=WormBase Gene ID /WP=CE02532 /TR=Q18438 /GB=AAA68422.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 39      6grp_high1_10_10 > 82      4grp_highest_8_8 > 14      4grp_high_8_8 > 14      6grp_highest_nonorm > 72      6grp_total > 73      4grp_total > 09      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 158
1 2 3 4 range
A 587.4
(-1.8)
P 		557.2
(-3)
P 		658.6
(1)
P 		709.2
(3)
P 		152
B 564.6
(-3)
P 		637
(-0.1)
P 		569
(-2.8)
P 		715.4
(3)
P 		151
C 586.7
(-2.6)
P 		579.3
(-3)
P 		583.9
(-2.8)
P 		701.9
(3)
P 		123
avr 579.6
(-3) 		591.2
(-2.5) 		603.8
(-1.9) 		708.8
(3) 		129

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 259
1 2 3 4 5 6 range
A 293.8
(-3)
P 		336
(-2)
P 		398.7
(-0.6)
P 		417
(-0.1)
P 		552.6
(3)
P 		442.5
(0.4)
P 		259
B 413.5
(-1.6)
P 		389.9
(-3)
P 		466.4
(1.7)
P 		488.3
(3)
P 		411.3
(-1.7)
P 		423.7
(-0.9)
P 		98
C 390.6
(-2.6)
P 		419.9
(-1)
P 		438.1
(-0.1)
P 		496
(3)
P 		401.3
(-2)
P 		382.1
(-3)
P 		114
avr 366
(-3) 		381.9
(-2.1) 		434.4
(1.1) 		467.1
(3) 		455.1
(2.3) 		416.1
(-0) 		101
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 110
1 2 3 4 range
A 213.9
(3)
P 		120.9
(-2.1)
P 		172.2
(0.7)
P 		103.8
(-3)
P 		110
B 180
(3)
P 		157.3
(0.2)
P 		131.8
(-3)
P 		152.5
(-0.4)
P 		48
C 194.2
(2.3)
P 		166.5
(0.4)
P 		203.5
(3)
P 		118.4
(-3)
P 		85
avr 196
(3) 		148.2
(-1) 		169.2
(0.7) 		124.9
(-3) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 113
1 2 3 4 5 6 range
A 54.2
(-3)
P 		119.5
(0.5)
P 		86.8
(-1.3)
P 		105.8
(-0.3)
P 		166.8
(3)
P 		107.7
(-0.1)
P 		113
B 143.9
(0.4)
P 		129.8
(-1.2)
P 		113.3
(-3)
P 		129.3
(-1.2)
P 		167.1
(3)
P 		158
(2)
P 		54
C 144.8
(3)
P 		128.1
(0.8)
P 		111.5
(-1.4)
P 		99.7
(-3)
P 		129.8
(1)
P 		127.9
(0.8)
P 		45
avr 114.3
(-1.8) 		125.8
(-0.4) 		103.9
(-3) 		111.6
(-2.1) 		154.6
(3) 		131.2
(0.2) 		51
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186411_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17298
Sequence Type Exemplar sequence
Representative Public ID C34D10.1 NCBI
Target Description C34D10.1 /REP_DB=WormBase Gene ID /WP=CE02532 /TR=Q18438 /GB=AAA68422.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076950(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076950 NCBI Caenorhabditis elegans C34D10.1 (C34D10.1) mRNA, complete cds. 11/11 None
SNAP00000010185 ENSEMBL cdna:SNAP chromosome:CEL140:X:8029440:8031233:1 11/11 None
GENEFINDER00000010188 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8029440:8031233:1 11/11 None
C34D10.1 ENSEMBL cdna:known chromosome:CEL140:X:8029440:8031395:1 gene:C34D10.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8029438-8031232(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C34D10.1
Entrez Gene 181060 Entrez gene
SwissProt Q18438 EMBL-EBI
WormBase CE02532 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1605873_AT similar to Motile sperm domain containing protein 1 cfa
CANINE:1591612_S_AT similar to Motile sperm domain containing protein 1 cfa
CANINE:1591990_S_AT similar to Motile sperm domain containing protein 1 cfa
CANINE_2:CFA.10830.1.A1_AT similar to Motile sperm domain containing protein 1 cfa
CANINE_2:CFA.10830.2.A1_S_AT similar to Motile sperm domain containing protein 1 cfa
CHICKEN:GGA.7275.1.S1_AT motile sperm domain containing 1 gga
HG-U133_PLUS_2:218853_S_AT motile sperm domain containing 1 hs
HG-U133A:218853_S_AT motile sperm domain containing 1 hs
HG-U133A_2:218853_S_AT motile sperm domain containing 1 hs
HU35KSUBB:RC_AA121788_AT motile sperm domain containing 1 hs
U133_X3P:G9506542_3P_S_AT motile sperm domain containing 1 hs
U133_X3P:HS2.384597.1.S1_3P_S_AT motile sperm domain containing 1 hs
U133_X3P:1557455_3P_S_AT motile sperm domain containing 1 hs
HG-U133_PLUS_2:1557455_S_AT motile sperm domain containing 1 hs
HG-U95C:62462_AT motile sperm domain containing 1 hs
HG-U95E:73631_AT motile sperm domain containing 1 hs
HG-U95E:83239_AT motile sperm domain containing 1 hs
HG-U95D:90151_AT motile sperm domain containing 1 hs
U133_X3P:HS2.384597.1.S1_3P_AT Motile sperm domain containing 1 hs
HU35KSUBB:RC_T91371_AT Motile sperm domain containing 1 hs
MG-U74BV2:108101_AT motile sperm domain containing 1 mm
MOE430A:1424280_AT motile sperm domain containing 1 mm
MOUSE430A_2:1424280_AT motile sperm domain containing 1 mm
MOUSE430_2:1424280_AT motile sperm domain containing 1 mm
MU19KSUBC:TC41049_AT Motile sperm domain containing 1 (Mospd1), mRNA mm
MU19KSUBC:TC41049_G_AT Motile sperm domain containing 1 (Mospd1), mRNA mm
RG-U34C:RC_AI234079_AT similar to RIKEN cDNA 1810018L05 rn
RAE230A:1376861_AT similar to RIKEN cDNA 1810018L05 rn
RAT230_2:1376861_AT similar to RIKEN cDNA 1810018L05 rn
RG-U34C:RC_AI234079_AT similar to motile sperm domain containing 1 rn
RAE230A:1376861_AT similar to motile sperm domain containing 1 rn
RAT230_2:1376861_AT similar to motile sperm domain containing 1 rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5198 structural molecule activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA68422 Hypothetical protein C34D10.1 [Caenorhabditis elegans] ref|NP_509351.1| C34D10.1 [Caenorhabditis elegans] 1.0E-113
blast CAE70336 Hypothetical protein CBG16873 [Caenorhabditis briggsae] 4.0E-39
blast CAI42829 motile sperm domain containing 1 [Homo sapiens] 2.0E-26
Protein Domains
Database ID Description E-Value
Pfam IPR000535 EMBL-EBI Major sperm protein (MSP) domain 8.8E-7
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509351.1 2 147-169,184-202
C34D10.1 2 147-169,184-202
SNAP00000010185 2 147-169,184-202
GENEFINDER00000010188 2 147-169,184-202
Sequence
Target Sequence 
>C. ELEGANS:186411_AT
gagcagatgaggacgcattgcccgtttttgtcaacacaacagaattacaattccggctca
acgagaaatcacaggcaaagctgttcacattgtacaacccatttggtcatgtgataactt
ataaaattttgtgcactgccactaggaactatactgtaaatgaaactaccggtgtcctcc
aagcaaaatgttgtcaagatatagttgtccgatgtatccagcgtctcccagttggcaacg
tcgacaagttgaaaattgagattagcaaaaaaggatcgccgacggcgagtggatcctgcg
ttctcacgttactcaccgtgtcctccgagcacacaaatcccgatgaaccccgttttgaaa
aagtccagcaatcaaacagaatgagcagttctacaacaagcgaaagaggaaacgatagga
accaatcaagcatgtgggcttgtctcatcgttggcctgtgttgtgctgtcgcactcgtct
gtccaaccgccggtgatattgaatcaaaatcttcatccgttcccccaatgctccacatgt
cctttcaacagaagctagtcgcttcttatattctcggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCAGATGAGGACGCATTGCCCGT 643 389 20 Antisense
CATTGCCCGTTTTTGTCAACACAAC 524 217 35 Antisense
AGCTGTTCACATTGTACAACCCATT 637 79 98 Antisense
GTGCACTGCCACTAGGAACTATACT 597 479 150 Antisense
TAAATGAAACTACCGGTGTCCTCCA 498 639 176 Antisense
ATAGTTGTCCGATGTATCCAGCGTC 396 21 220 Antisense
TCCGAGCACACAAATCCCGATGAAC 351 593 343 Antisense
AAGCATGTGGGCTTGTCTCATCGTT 153 151 447 Antisense
GTCTGTCCAACCGCCGGTGATATTG 676 469 496 Antisense
GAATCAAAATCTTCATCCGTTCCCC 453 327 520 Antisense
GCTAGTCGCTTCTTATATTCTCGGC 522 303 573 Antisense
Sequence Source Affymetrix Proprietary Database