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[186410_at]

Description C07D10.1 /REP_DB=WormBase Gene ID /WP=CE27056 /TR=Q17783 /GB=AAK31399.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 07      6grp_high1_10_10 > 71      4grp_high_8_8 > 53      6grp_highest_nonorm > 90      6grp_total > 80      4grp_total > 59      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 106
1 2 3 4 range
A 77.5
(-1.6)
P 		87
(-0.1)
P 		107.4
(3)
P 		68.5
(-3)
P 		39
B 118.7
(2)
P 		136.1
(3)
P 		111.3
(1.6)
P 		30.4
(-3)
A 		106
C 94.9
(-2.4)
P 		134.4
(3)
P 		118.5
(0.8)
P 		90.8
(-3)
P 		44
avr 97
(0.6) 		119.2
(3) 		112.4
(2.3) 		63.2
(-3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 123
1 2 3 4 5 6 range
A 87.6
(-3)
P 		114.2
(-1.7)
P 		157.6
(0.4)
P 		211
(3)
P 		147.4
(-0.1)
P 		119.2
(-1.5)
P 		123
B 119.9
(-1.6)
P 		149.1
(0.5)
P 		148.4
(0.4)
P 		185
(3)
P 		158.3
(1.1)
P 		100.1
(-3)
P 		85
C 104.3
(-2.8)
P 		197.1
(2.3)
P 		106.1
(-2.7)
P 		209.9
(3)
P 		101.3
(-3)
P 		109.9
(-2.5)
P 		109
avr 103.9
(-3) 		153.5
(0) 		137.4
(-1) 		202
(3) 		135.7
(-1.1) 		109.7
(-2.6) 		98
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 28.2
(3)
P 		18.9
(-0.1)
P 		28.1
(3)
P 		10
(-3)
P 		18
B 37.8
(3)
P 		33.6
(2.2)
P 		25.8
(0.7)
P 		6.5
(-3)
A 		31
C 31.4
(0.7)
P 		38.7
(2.4)
P 		41.3
(3)
P 		15.3
(-3)
P 		26
avr 32.5
(3) 		30.4
(2.4) 		31.7
(2.8) 		10.6
(-3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 16.2
(-3)
P 		40.6
(0.9)
P 		34.3
(-0.1)
P 		53.5
(3)
P 		44.5
(1.6)
P 		29
(-0.9)
P 		37
B 41.7
(-1.8)
P 		49.6
(-0.1)
P 		36
(-3)
P 		49
(-0.2)
P 		64.3
(3)
P 		37.3
(-2.7)
P 		28
C 38.7
(-0.9)
P 		60.1
(3)
P 		27
(-3)
P 		42.2
(-0.2)
P 		32.8
(-1.9)
P 		36.8
(-1.2)
P 		33
avr 32.2
(-3) 		50.1
(3) 		32.4
(-2.9) 		48.2
(2.4) 		47.2
(2) 		34.4
(-2.3) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186410_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4343
Sequence Type Exemplar sequence
Representative Public ID C07D10.1 NCBI
Target Description C07D10.1 /REP_DB=WormBase Gene ID /WP=CE27056 /TR=Q17783 /GB=AAK31399.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063150(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063150 NCBI Caenorhabditis elegans C07D10.1 (C07D10.1) mRNA, complete cds. 11/11 None
C07D10.1 ENSEMBL cdna:known chromosome:CEL140:II:7398942:7400469:1 gene:C07D10.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000000403 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7398824-7400352(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C07D10.1
Entrez Gene 174211 Entrez gene
SwissProt Q17783 EMBL-EBI
WormBase CE27056 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK31399 Hypothetical protein C07D10.1 [Caenorhabditis elegans] ref|NP_495551.1| C07D10.1 [Caenorhabditis elegans] 0.0
blast T15443 hypothetical protein C07D10.1 - Caenorhabditis elegans 0.0
blast CAE67611 Hypothetical protein CBG13158 [Caenorhabditis briggsae] 4.0E-90
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.1E-4
Sequence
Target Sequence 
>C. ELEGANS:186410_AT
agagagctcgaattcgtcactcataatcccaacttaaaaatttcaagcattttgaaactt
cttgaaagatttccaaacttgatccgtttttcactttctcattgcttcactgagtttgtt
tcaataggtgaaatatttaagaaactttctcatttacaatacctaagagtttatgatttt
gttggaagcagtgaaagtggacaatcaagcggattggttttcgatgataatgctgtaatt
cagcttatgaaaaatcaaactggaagcaggaaaattcagaaaattgagttatttaatatc
aaagtaacagtttcaaggcatacgatgattgaatcactccggaaattggcacgtcttccg
gttcagtcggaaatattcaacaagccaatactgacagagaaaaacaaagataatcagtct
attcatctactatttgaaaattgcatctgggaaaccataaaagagctcaacttactttct
gatattattcgaattgcttcacaattctgttttccaattcaacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAGAGCTCGAATTCGTCACTCATA 263 69 478 Antisense
TCGTCACTCATAATCCCAACTTAAA 358 605 491 Antisense
TCCAAACTTGATCCGTTTTTCACTT 573 585 549 Antisense
TTCACTTTCTCATTGCTTCACTGAG 448 687 567 Antisense
GCTTCACTGAGTTTGTTTCAATAGG 495 305 581 Antisense
CAAGCGGATTGGTTTTCGATGATAA 162 187 683 Antisense
GAATCACTCCGGAAATTGGCACGTC 468 327 808 Antisense
CACGTCTTCCGGTTCAGTCGGAAAT 396 195 827 Antisense
TAATCAGTCTATTCATCTACTATTT 455 635 888 Antisense
AAGAGCTCAACTTACTTTCTGATAT 151 155 938 Antisense
ACAATTCTGTTTTCCAATTCAACAA 337 115 978 Antisense
Sequence Source Affymetrix Proprietary Database