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[186409_at]

Description F36F12.6 /REP_DB=WormBase Gene ID /WP=CE17786 /TR=O76401 /GB=AAC19205.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 66      4grp_total > 26      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 147
1 2 3 4 range
A 34.5
(-2)
A 		81.1
(3)
A 		79.2
(2.8)
A 		25.2
(-3)
A 		56
B 55.9
(1.5)
A 		39.8
(-0.3)
A 		15
(-3)
A 		69.7
(3)
A 		55
C 12.8
(-2.9)
A 		77.8
(-0.3)
A 		10.8
(-3)
A 		157.5
(3)
A 		147
avr 34.4
(-3) 		66.2
(0.8) 		35
(-2.9) 		84.1
(3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 21.3
(-1.8)
A 		9.2
(-3)
A 		67.4
(3)
A 		36.6
(-0.2)
A 		46.4
(0.8)
A 		50
(1.2)
A 		58
B 14.5
(-2.4)
A 		17.6
(-2)
A 		40
(0.7)
A 		15.2
(-2.3)
A 		9.1
(-3)
A 		59.1
(3)
A 		50
C 10.7
(-2.3)
A 		18.2
(-1.7)
A 		2.9
(-3)
A 		14.9
(-2)
A 		7.5
(-2.6)
A 		72.2
(3)
A 		69
avr 15.5
(-2.9) 		15
(-3) 		36.8
(-0.1) 		22.2
(-2) 		21
(-2.2) 		60.4
(3) 		45
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 12.6
(0.1)
A 		17.6
(1.9)
A 		20.7
(3)
A 		3.7
(-3)
A 		17
B 17.8
(3)
A 		9.8
(-0.4)
A 		3.5
(-3)
A 		14.9
(1.8)
A 		14
C 4.2
(-2.9)
A 		22.4
(1.9)
A 		3.7
(-3)
A 		26.6
(3)
A 		23
avr 11.5
(-1.2) 		16.6
(3) 		9.3
(-3) 		15.1
(1.8) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 3.9
(-2.7)
A 		3.3
(-3)
A 		14.7
(3)
A 		9.3
(0.2)
A 		14
(2.6)
A 		12.2
(1.7)
A 		11
B 5
(-2.6)
A 		5.8
(-2.3)
A 		9.7
(-1)
A 		4
(-2.9)
A 		3.7
(-3)
A 		22.1
(3)
A 		18
C 4
(-2.2)
A 		5.6
(-1.7)
A 		0.7
(-3)
A 		3
(-2.4)
A 		2.4
(-2.6)
A 		24.2
(3)
A 		24
avr 4.3
(-3) 		4.9
(-2.8) 		8.4
(-1.4) 		5.4
(-2.6) 		6.7
(-2.1) 		19.5
(3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186409_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15324
Sequence Type Exemplar sequence
Representative Public ID F36F12.6 NCBI
Target Description F36F12.6 /REP_DB=WormBase Gene ID /WP=CE17786 /TR=O76401 /GB=AAC19205.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071168(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071168 NCBI Caenorhabditis elegans F36F12.6 (F36F12.6) mRNA, complete cds. 11/11 A 
SNAP00000033958 ENSEMBL cdna:SNAP chromosome:CEL140:V:2097781:2098939:1 11/11 None
GENEFINDER00000033965 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2097781:2098939:1 11/11 None
F36F12.6 ENSEMBL cdna:known chromosome:CEL140:V:2097781:2098972:1 gene:F36F12.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2097780-2098939(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F36F12.6
Entrez Gene 178689 Entrez gene
SwissProt O76401 EMBL-EBI
WormBase CE17786 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC19205 Hypothetical protein F36F12.6 [Caenorhabditis elegans] ref|NP_503569.1| F36F12.6 [Caenorhabditis elegans] 1.0E-107
blast AAC19204 Hypothetical protein F36F12.5 [Caenorhabditis elegans] ref|NP_503568.1| F36F12.5 [Caenorhabditis elegans] 1.0E-97
blast CAE63493 Hypothetical protein CBG07963 [Caenorhabditis briggsae] 7.0E-37
Sequence
Target Sequence 
>C. ELEGANS:186409_AT
cttcgcaggccgccttggtagagattctgcaaaccaagtatgcgccacccacggaggagt
actctcagggatgcagaatgtcgaagagatcaactatatcgtttcccagtctgtgagatt
gatttccccagaagtcagtggtggcgtttgggtaggagctcgacgccgaccagcttgcat
cagctcagggatcactgcaacttgtacgaagaccaacagtttctactggactgacatctc
ggctactggaatcaatggaatgcttttcacggatggagagccaaataatggagctgctgc
attggatcaggat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTCGCAGGCCGCCTTGGTAGAGAT 155 221 219 Antisense
GCAGGCCGCCTTGGTAGAGATTCTG 405 311 223 Antisense
GCCGCCTTGGTAGAGATTCTGCAAA 40 287 227 Antisense
TATATCGTTTCCCAGTCTGTGAGAT 332 661 313 Antisense
CCCAGTCTGTGAGATTGATTTCCCC 217 259 323 Antisense
GTGAGATTGATTTCCCCAGAAGTCA 424 483 331 Antisense
GATTTCCCCAGAAGTCAGTGGTGGC 524 427 339 Antisense
CAGAAGTCAGTGGTGGCGTTTGGGT 628 185 347 Antisense
AGTCAGTGGTGGCGTTTGGGTAGGA 536 49 351 Antisense
AGCCAAATAATGGAGCTGCTGCATT 420 83 497 Antisense
TGGAGCTGCTGCATTGGATCAGGAT 147 549 507 Antisense
Sequence Source Affymetrix Proprietary Database