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[186408_at]

Description Y56A3A.31 /REP_DB=WormBase Gene ID /WP=CE22596 /TR=Q9U230 /GB=CAB60510.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 24      4grp_total > 0      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 157
1 2 3 4 range
A 70.9
(-1.8)
A 		47.8
(-3)
A 		73.8
(-1.7)
A 		164.9
(3)
A 		117
B 39.2
(-0.6)
A 		7.9
(-3)
A 		76.3
(2.3)
A 		85.8
(3)
A 		78
C 88.5
(3)
A 		14.5
(-3)
A 		53.7
(0.2)
A 		79.5
(2.3)
A 		74
avr 66.2
(-0) 		23.4
(-3) 		67.9
(0.1) 		110.1
(3) 		87

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 61.9
(3)
A 		49.3
(1.6)
A 		46.8
(1.3)
A 		9.7
(-3)
A 		10.6
(-2.9)
A 		18
(-2)
A 		52
B 66.2
(0.7)
A 		92.3
(3)
A 		44
(-1.2)
A 		45.5
(-1.1)
A 		65
(0.6)
A 		23.5
(-3)
A 		69
C 49.6
(0.5)
A 		69.3
(2)
A 		81.3
(3)
A 		51.9
(0.7)
A 		6
(-3)
A 		47.3
(0.3)
A 		75
avr 59.2
(1.5) 		70.3
(3) 		57.4
(1.2) 		35.7
(-1.8) 		27.2
(-3) 		29.6
(-2.7) 		43
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 25.8
(3)
A 		10.4
(-3)
A 		19.3
(0.5)
A 		24.1
(2.3)
A 		15
B 12.5
(0.9)
A 		1.9
(-3)
A 		17.7
(2.8)
A 		18.3
(3)
A 		16
C 29.3
(3)
A 		4.2
(-3)
A 		18.7
(0.5)
A 		13.4
(-0.8)
A 		25
avr 22.5
(3) 		5.5
(-3) 		18.6
(1.6) 		18.6
(1.6) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 11.4
(0.6)
A 		17.5
(3)
A 		10.2
(0.1)
A 		2.5
(-3)
A 		3.2
(-2.7)
A 		4.4
(-2.2)
A 		15
B 23
(0.9)
A 		30.7
(3)
A 		10.7
(-2.5)
A 		12.1
(-2.1)
A 		26.4
(1.8)
A 		8.8
(-3)
A 		22
C 18.4
(2.2)
A 		21.1
(3)
A 		20.7
(2.9)
A 		10.4
(-0.4)
A 		2
(-3)
A 		15.8
(1.3)
A 		19
avr 17.6
(0.8) 		23.1
(3) 		13.9
(-0.7) 		8.3
(-3) 		10.5
(-2.1) 		9.7
(-2.4) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186408_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7033
Sequence Type Exemplar sequence
Representative Public ID Y56A3A.31 NCBI
Target Description Y56A3A.31 /REP_DB=WormBase Gene ID /WP=CE22596 /TR=Q9U230 /GB=CAB60510.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067162(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067162 NCBI Caenorhabditis elegans Y56A3A.31 (Y56A3A.31) mRNA, complete cds. 11/11 None
SNAP00000035207 ENSEMBL cdna:SNAP chromosome:CEL140:III:11981704:11989385:1 11/11 None
GENEFINDER00000035224 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11982442:11989713:1 10/11 None
Y56A3A.31 ENSEMBL cdna:known chromosome:CEL140:III:11982430:11989761:1 gene:Y56A3A.31 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11982437-11989381(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y56A3A.31
Entrez Gene 190330 Entrez gene
SwissProt Q9U230 EMBL-EBI
WormBase CE22596 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60510 Hypothetical protein Y56A3A.31 [Caenorhabditis elegans] ref|NP_499563.1| Y56A3A.31 [Caenorhabditis elegans] 0.0
blast CAB60510 Hypothetical protein Y56A3A.31 [Caenorhabditis elegans] ref|NP_499563.1| Y56A3A.31 [Caenorhabditis elegans] 1.0E-153
blast CAE67754 Hypothetical protein CBG13329 [Caenorhabditis briggsae] 1.0E-144
blast CAE67754 Hypothetical protein CBG13329 [Caenorhabditis briggsae] 1.0E-138
blast CAE67754 Hypothetical protein CBG13329 [Caenorhabditis briggsae] 1.0E-117
Sequence
Target Sequence 
>C. ELEGANS:186408_AT
tgaattctgtgctcttttcgtgtcacgtgccaccctccacggccctctttcaccaccaat
gatcacattaatcgttcgatattgcactagaaacatgcaattcatccttcgacaccttcg
agacacttcatggcttggaaatgattttgcggagaaagtggtgccgaagttggttgagca
gacacttttggatgatgattcggatagtcttggatcgtgcctgtgttatgtactttttag
atggcatattgatgttcttgctaatgaggatcggaagggtccgacaaaacggatagaggt
tttagacctcctgctctcggccgactacccatggaccaaacgccgggcctgtgtgctcgc
aagtgcaattggagcatcgacgagacctgaagctgagattcagaaggagcttcaacgact
agaagttccagaacactttcaaccggttattgacctgctgtgctccaaaggaatcaaaaa
atcctcgcagacagtgctcgatgccatttcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAATTCTGTGCTCTTTTCGTGTCA 503 575 690 Antisense
GAAACATGCAATTCATCCTTCGACA 199 357 779 Antisense
CTTCGACACCTTCGAGACACTTCAT 149 221 796 Antisense
GATTCGGATAGTCTTGGATCGTGCC 47 433 886 Antisense
GGATCGTGCCTGTGTTATGTACTTT 299 509 901 Antisense
TAGAGGTTTTAGACCTCCTGCTCTC 357 651 983 Antisense
GCCTGTGTGCTCGCAAGTGCAATTG 409 283 1036 Antisense
GCATCGACGAGACCTGAAGCTGAGA 569 309 1063 Antisense
GAAGTTCCAGAACACTTTCAACCGG 363 337 1111 Antisense
AACCGGTTATTGACCTGCTGTGCTC 448 147 1130 Antisense
CAGACAGTGCTCGATGCCATTTCAG 572 205 1177 Antisense
Sequence Source Affymetrix Proprietary Database