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[186407_at]

Description C42D4.11 /REP_DB=WormBase Gene ID /WP=CE04199 /TR=Q18574 /GB=AAA83349.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 25      4grp_total > 10      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 7.9
(-2.7)
A 		8.7
(-2.6)
A 		4.6
(-3)
A 		62.8
(3)
A 		58
B 7.1
(-2.7)
A 		16.3
(3)
A 		11.7
(0.2)
A 		6.6
(-3)
A 		10
C 8.1
(-3)
A 		9
(1.5)
A 		8.7
(-0)
A 		9.3
(3)
A 		1
avr 7.7
(-3) 		11.3
(-1.8) 		8.3
(-2.8) 		26.2
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 26.5
(3)
A 		6.8
(-2.2)
A 		5.7
(-2.5)
A 		9.5
(-1.5)
A 		3.7
(-3)
A 		5.9
(-2.4)
A 		23
B 10.2
(-0.2)
A 		15.3
(1.9)
A 		18.1
(3)
A 		9
(-0.6)
A 		6
(-1.8)
A 		3.1
(-3)
A 		15
C 4.8
(-3)
A 		24
(3)
A 		5.6
(-2.8)
A 		5.3
(-2.8)
A 		9.9
(-1.4)
A 		10.2
(-1.3)
A 		19
avr 13.8
(1.9) 		15.4
(3) 		9.8
(-0.7) 		7.9
(-2) 		6.5
(-2.9) 		6.4
(-3) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 2.9
(-1.7)
A 		1.9
(-2.5)
A 		1.2
(-3)
A 		9.2
(3)
A 		8
B 2.3
(-0.9)
A 		4
(3)
A 		2.7
(0)
A 		1.4
(-3)
A 		3
C 2.7
(1.7)
A 		2.6
(1.3)
A 		3
(3)
A 		1.6
(-3)
A 		1
avr 2.6
(-2) 		2.8
(-1.3) 		2.3
(-3) 		4.1
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 4.9
(3)
A 		2.4
(-0.9)
A 		1.2
(-2.8)
A 		2.4
(-0.9)
A 		1.1
(-3)
A 		1.4
(-2.5)
A 		4
B 3.5
(0.5)
A 		5.1
(3)
A 		4.4
(1.9)
A 		2.4
(-1.2)
A 		2.4
(-1.2)
A 		1.2
(-3)
A 		4
C 1.8
(-2.3)
A 		7.3
(3)
A 		1.4
(-2.7)
A 		1.1
(-3)
A 		3.2
(-1)
A 		3.4
(-0.8)
A 		6
avr 3.4
(-0.1) 		4.9
(3) 		2.3
(-2.4) 		2
(-3) 		2.2
(-2.6) 		2
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186407_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8599
Sequence Type Exemplar sequence
Representative Public ID C42D4.11 NCBI
Target Description C42D4.11 /REP_DB=WormBase Gene ID /WP=CE04199 /TR=Q18574 /GB=AAA83349.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068733(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068733 NCBI Caenorhabditis elegans C42D4.11 (C42D4.11) mRNA, complete cds. 11/11 None
SNAP00000029586 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7183395:7184680:-1 11/11 None
GENEFINDER00000029592 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7183395:7184528:-1 11/11 None
C42D4.11 ENSEMBL cdna:known chromosome:CEL140:IV:7183395:7184528:-1 gene:C42D4.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7183400-7184534(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C42D4.11
Entrez Gene 183404 Entrez gene
SwissProt Q18574 EMBL-EBI
WormBase CE04199 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_501134 C42D4.11 [Caenorhabditis elegans] gb|AAA83349.1| Hypothetical protein C42D4.11 [Caenorhabditis elegans] 1.0E-180
blast NP_501134 C42D4.11 [Caenorhabditis elegans] gb|AAA83349.1| Hypothetical protein C42D4.11 [Caenorhabditis elegans] 1.0E-178
blast CAB55160 Hypothetical protein Y116A8A.8 [Caenorhabditis elegans] ref|NP_502996.1| Y116A8A.8 [Caenorhabditis elegans] 1.0E-101
blast CAB55160 Hypothetical protein Y116A8A.8 [Caenorhabditis elegans] ref|NP_502996.1| Y116A8A.8 [Caenorhabditis elegans] 1.0E-99
blast CAA22060 Hypothetical protein ZC15.2 [Caenorhabditis elegans] emb|CAB07710.1| Hypothetical protein ZC15.2 [Caenorhabditis elegans] ref|NP_507917.1| ZC15.2 [Caenorhabditis elegans] 4.0E-26
blast CAA22060 Hypothetical protein ZC15.2 [Caenorhabditis elegans] emb|CAB07710.1| Hypothetical protein ZC15.2 [Caenorhabditis elegans] ref|NP_507917.1| ZC15.2 [Caenorhabditis elegans] 1.0E-25
Sequence
Target Sequence 
>C. ELEGANS:186407_AT
aacaatacttccaacttgacgcaatatgaatattcaacacaactttctgaggatggaaat
gttttgaatttttcctacagtgctatgaagagttgtcctcctcaatgggagcactttgac
agggcccgtggcagctggtgtattaaagttatcagacaagatggtactcatgttgaagca
agtaaggcatgtaacgaatataatgccgctttgactggactggaaacagaaaatgaaact
tatcatatttggaagactgcctacagtcttgtagaaagatatccctctcaaccaaagatt
accgagcgaatatggatagacggtgtcagaaaagtaacatgtcaagaaaagctaactttt
aatacaaaggagggatgtgtaagtttcgacgggtttgatttcgaggacaagtttctattg
gaaaaacaaggatacacttgggaacaacacaatccagataggttaggcccagactccggt
cctcaccaggactgtcttgcattgtggattacagcaaataatcgaactatcgatgatgaa
atgtgttcaaaagtactcgacgacgcccca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACAATACTTCCAACTTGACGCAAT 128 135 301 Antisense
AGTGCTATGAAGAGTTGTCCTCCTC 173 59 379 Antisense
GAGTTGTCCTCCTCAATGGGAGCAC 386 397 390 Antisense
ATGGGAGCACTTTGACAGGGCCCGT 210 51 405 Antisense
GCCCGTGGCAGCTGGTGTATTAAAG 201 287 424 Antisense
ATAATGCCGCTTTGACTGGACTGGA 691 25 500 Antisense
GATATCCCTCTCAACCAAAGATTAC 138 425 578 Antisense
GGATGTGTAAGTTTCGACGGGTTTG 579 505 673 Antisense
CCAGATAGGTTAGGCCCAGACTCCG 319 269 754 Antisense
AGGACTGTCTTGCATTGTGGATTAC 695 55 788 Antisense
TTCAAAAGTACTCGACGACGCCCCA 583 683 846 Antisense
Sequence Source Affymetrix Proprietary Database