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[186406_at]

Description F26D11.4 /REP_DB=WormBase Gene ID /WP=CE17708 /TR=O61960 /GB=AAC17747.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 22      4grp_total > 26      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 21
(-3)
A 		61.8
(3)
A 		29.5
(-1.8)
A 		30.7
(-1.6)
A 		41
B 22
(-2.5)
A 		36.5
(-0)
A 		18.8
(-3)
A 		54.7
(3)
A 		36
C 27.9
(-2.7)
A 		56.4
(-0.8)
P 		23.2
(-3)
A 		115.6
(3)
P 		92
avr 23.6
(-3) 		51.6
(0.9) 		23.8
(-3) 		67
(3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 31.6
(1.9)
A 		16.2
(-1)
A 		37.5
(3)
P 		27.4
(1.1)
A 		19.9
(-0.3)
A 		5.7
(-3)
A 		32
B 13.4
(-1.8)
A 		16.3
(-0.8)
A 		27.3
(3)
A 		18.2
(-0.1)
A 		16.6
(-0.7)
A 		9.8
(-3)
A 		18
C 24.3
(-0.7)
A 		56.3
(3)
P 		13.3
(-1.9)
A 		35
(0.6)
A 		31
(0.1)
A 		3.8
(-3)
A 		53
avr 23.1
(1.3) 		29.6
(3) 		26
(2.1) 		26.9
(2.3) 		22.5
(1.2) 		6.4
(-3) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 7.7
(-0.8)
A 		13.4
(3)
A 		7.7
(-0.8)
A 		4.5
(-3)
A 		9
B 7
(-0.9)
A 		9
(0.8)
A 		4.4
(-3)
A 		11.7
(3)
A 		7
C 9.2
(-2.4)
A 		16.2
(1.3)
P 		8.1
(-3)
A 		19.5
(3)
P 		11
avr 8
(-1.7) 		12.9
(3) 		6.7
(-3) 		11.9
(2) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 5.8
(0.9)
A 		5.8
(0.9)
A 		8.2
(3)
P 		6.9
(1.9)
A 		6
(1.1)
A 		1.4
(-3)
A 		7
B 4.7
(-1.1)
A 		5.4
(0.3)
A 		6.6
(2.6)
A 		4.8
(-0.9)
A 		6.8
(3)
A 		3.7
(-3)
A 		3
C 9
(-0.1)
A 		17.2
(3)
P 		3.4
(-2.2)
A 		7
(-0.8)
A 		10
(0.3)
A 		1.3
(-3)
A 		16
avr 6.5
(0.6) 		9.5
(3) 		6.1
(0.2) 		6.2
(0.3) 		7.6
(1.5) 		2.1
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186406_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11536
Sequence Type Exemplar sequence
Representative Public ID F26D11.4 NCBI
Target Description F26D11.4 /REP_DB=WormBase Gene ID /WP=CE17708 /TR=O61960 /GB=AAC17747.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072643(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072643 NCBI Caenorhabditis elegans F26D11.4 (F26D11.4) mRNA, complete cds. 11/11 None
GENEFINDER00000012548 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7949992:7951146:-1 11/11 None
F26D11.4 ENSEMBL cdna:known chromosome:CEL140:V:7949822:7951206:-1 gene:F26D11.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000012535 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7949822-7951207(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F26D11.4
Entrez Gene 184975 Entrez gene
SwissProt O61960 EMBL-EBI
WormBase CE17708 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC17747 Hypothetical protein F26D11.4 [Caenorhabditis elegans] ref|NP_505044.1| F26D11.4 [Caenorhabditis elegans] 1.0E-141
blast AAC17747 Hypothetical protein F26D11.4 [Caenorhabditis elegans] ref|NP_505044.1| F26D11.4 [Caenorhabditis elegans] 1.0E-111
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505044.1 1 20-42
F26D11.4 1 20-42
Sequence
Target Sequence 
>C. ELEGANS:186406_AT
gcgacggttcgaagcaagcagcaataaagttgatgacatagaagaaaccacagaaagtcc
gaaaattcaaaatgatgtcgtgtgtctaaattcattcattgatgtcaaagatgcaacaca
ggaggatatcaaaaagtacgaggaaaatgaaaaggacggaatttgcatgctgcataaaaa
tttggatttacatccatatgttttgctctctggacatcggaatcgagaatgtaaccagcc
aataattcaattcgcctcattagataaaaagtgcaaaaatggtaccactgcattcgaaat
agccgacggatcatctaatcacagttatttacaatctgcgtggtatacagaatcaacaag
acgtaccgaccaagatattgttttcaactgtatgatgtatcttagtaatgctccagctgc
caccactaatttgttcatggatattagttgtatggaaatcaaagcttgggtttgtggagt
tactgtca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGACGGTTCGAAGCAAGCAGCAAT 590 287 162 Antisense
TGTCGTGTGTCTAAATTCATTCATT 49 559 237 Antisense
AAAGGACGGAATTTGCATGCTGCAT 583 121 312 Antisense
TACATCCATATGTTTTGCTCTCTGG 242 645 350 Antisense
ACCAGCCAATAATTCAATTCGCCTC 651 85 395 Antisense
GGTACCACTGCATTCGAAATAGCCG 348 505 442 Antisense
ATAGCCGACGGATCATCTAATCACA 233 23 460 Antisense
GAATCAACAAGACGTACCGACCAAG 704 323 511 Antisense
GTATCTTAGTAATGCTCCAGCTGCC 680 449 558 Antisense
AGCTGCCACCACTAATTTGTTCATG 105 81 576 Antisense
GCTTGGGTTTGTGGAGTTACTGTCA 449 303 625 Antisense
Sequence Source Affymetrix Proprietary Database