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[186404_at]

Description Y71F9B.1 /REP_DB=WormBase Gene ID /WP=CE24627 /TR=Q9N4G1 /GB=AAF36017.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 13      6grp_high1_10_10 > 30      4grp_highest_8_8 > 17      4grp_high_8_8 > 60      6grp_highest_nonorm > 73      6grp_total > 44      4grp_total > 59      6grp_high1_sub > 03      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 332
1 2 3 4 range
A 648.7
(3)
P 		581
(0.9)
P 		624.2
(2.2)
P 		456.9
(-3)
P 		192
B 512.6
(-2.3)
P 		612.5
(-0.2)
P 		772
(3)
P 		476.1
(-3)
P 		296
C 646.9
(0.6)
P 		779.2
(3)
P 		637.4
(0.4)
P 		447
(-3)
P 		332
avr 602.7
(0.9) 		657.6
(2.4) 		677.9
(3) 		460
(-3) 		218

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 321
1 2 3 4 5 6 range
A 567.9
(-1.5)
P 		533.9
(-2.2)
P 		809.8
(3)
P 		489
(-3)
P 		545.9
(-1.9)
P 		549.7
(-1.9)
P 		321
B 717.1
(2)
P 		617.3
(-1)
P 		747.9
(3)
P 		659.3
(0.3)
P 		553.6
(-3)
P 		651
(0)
P 		194
C 652.4
(3)
P 		647.4
(2.8)
P 		545.9
(-1.1)
P 		543.7
(-1.2)
P 		495.6
(-3)
P 		554.3
(-0.8)
P 		157
avr 645.8
(1) 		599.5
(-0.6) 		701.2
(3) 		564
(-1.9) 		531.7
(-3) 		585
(-1.1) 		170
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 169
1 2 3 4 range
A 236.2
(3)
P 		126.1
(-0.9)
P 		163.2
(0.4)
P 		66.9
(-3)
P 		169
B 163.5
(1.8)
P 		151.3
(0.9)
P 		178.9
(3)
P 		101.5
(-3)
P 		77
C 214.1
(2.6)
P 		224
(3)
P 		222.2
(2.9)
P 		75.4
(-3)
P 		149
avr 204.6
(3) 		167.1
(1.2) 		188.1
(2.2) 		81.3
(-3) 		123

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 145
1 2 3 4 5 6 range
A 104.7
(-3)
P 		189.9
(3)
P 		176.4
(2)
P 		124
(-1.6)
P 		164.7
(1.2)
P 		133.8
(-1)
P 		85
B 249.5
(3)
P 		205.5
(-0.5)
P 		181.6
(-2.4)
P 		174.6
(-3)
P 		224.9
(1)
P 		242.7
(2.5)
P 		75
C 241.8
(3)
P 		197.5
(1)
P 		138.9
(-1.7)
P 		109.3
(-3)
P 		160.4
(-0.7)
P 		185.6
(0.5)
P 		133
avr 198.7
(3) 		197.6
(2.9) 		165.6
(-0.2) 		136
(-3) 		183.3
(1.5) 		187.4
(1.9) 		63
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186404_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.109
Sequence Type Exemplar sequence
Representative Public ID Y71F9B.1 NCBI
Target Description Y71F9B.1 /REP_DB=WormBase Gene ID /WP=CE24627 /TR=Q9N4G1 /GB=AAF36017.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058638(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058638 NCBI Caenorhabditis elegans Y71F9B.1 (Y71F9B.1) mRNA, complete cds. 11/11 None
SNAP00000013313 ENSEMBL cdna:SNAP chromosome:CEL140:I:2774914:2775385:1 11/11 None
GENEFINDER00000013346 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2774914:2775385:1 11/11 None
Y71F9B.1 ENSEMBL cdna:known chromosome:CEL140:I:2774914:2775385:1 gene:Y71F9B.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2774913-2775385(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y71F9B.1
Entrez Gene 190590 Entrez gene
SwissProt Q9N4G1 EMBL-EBI
WormBase CE24627 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF36017 Hypothetical protein Y71F9B.1 [Caenorhabditis elegans] ref|NP_491039.1| Y71F9B.1 [Caenorhabditis elegans] 3.0E-65
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491039.1 4 27-46,55-77,92-109,116-138
Y71F9B.1 4 27-46,55-77,92-109,116-138
SNAP00000013313 4 27-46,55-77,92-109,116-138
GENEFINDER00000013346 4 27-46,55-77,92-109,116-138
Sequence
Target Sequence 
>C. ELEGANS:186404_AT
gaatcaattctcggtttgggccttctggcttacggccttctcgaaatctcgagaaatccg
acctggtgggcctatacgccggtctacttggtcccggcgatcctctccatcattcaaatt
ccacggaacgccacgtggcgcactctctcatccctctccatcgtcgccggcggtctctac
acgagttttctgctgtggacgttctcctctgtggaatctataccgacgatcgatttggaa
gaagaagccaagaaccttccgccggtagcccttggagccctgctgatcagcttcatccgt
ctcacacaggataagatctcccagccggtgcattatgtcagatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCAATTCTCGGTTTGGGCCTTC 378 319 31 Antisense
CTTACGGCCTTCTCGAAATCTCGAG 658 219 59 Antisense
TACGCCGGTCTACTTGGTCCCGGCG 75 649 105 Antisense
AAATTCCACGGAACGCCACGTGGCG 495 115 146 Antisense
CGGTCTCTACACGAGTTTTCTGCTG 83 245 201 Antisense
CGAGTTTTCTGCTGTGGACGTTCTC 702 249 212 Antisense
GACGTTCTCCTCTGTGGAATCTATA 456 377 228 Antisense
GAATCTATACCGACGATCGATTTGG 705 325 244 Antisense
GCTTCATCCGTCTCACACAGGATAA 641 305 320 Antisense
CACAGGATAAGATCTCCCAGCCGGT 520 195 335 Antisense
CCCAGCCGGTGCATTATGTCAGATC 531 257 350 Antisense
Sequence Source Affymetrix Proprietary Database