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[186403_at]

Description Y49F6C.2 /REP_DB=WormBase Gene ID /WP=CE22266 /TR=Q9TYI9 /GB=AAD12863.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 34      4grp_total > 12      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 13
(-1.4)
A 		2.9
(-3)
A 		20.2
(-0.2)
A 		40.4
(3)
A 		38
B 31.6
(3)
A 		3.3
(-2.6)
A 		1.5
(-3)
A 		23.9
(1.5)
A 		30
C 9.3
(-2.1)
A 		22.8
(-0.3)
A 		2.7
(-3)
A 		47
(3)
P 		44
avr 18
(-1) 		9.7
(-2.7) 		8.1
(-3) 		37.1
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 13.9
(-0.7)
A 		15.6
(-0.4)
A 		34.6
(3)
P 		12.7
(-0.9)
A 		3.1
(-2.6)
A 		1
(-3)
A 		34
B 28.4
(3)
A 		13.1
(-0.6)
A 		14.8
(-0.2)
A 		3.1
(-3)
A 		13.8
(-0.5)
A 		3.9
(-2.8)
A 		25
C 11.4
(0.3)
A 		19
(3)
M 		10.5
(0)
A 		2
(-3)
A 		2.5
(-2.8)
A 		18.8
(2.9)
A 		17
avr 17.9
(2.1) 		15.9
(1.3) 		20
(3) 		5.9
(-3) 		6.5
(-2.7) 		7.9
(-2.1) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 4.7
(1.6)
A 		0.6
(-3)
A 		5.3
(2.3)
A 		5.9
(3)
A 		5
B 10.1
(3)
A 		0.8
(-2.7)
A 		0.3
(-3)
A 		5.1
(-0.1)
A 		10
C 3.1
(-1.1)
A 		6.6
(1.9)
A 		0.9
(-3)
A 		7.9
(3)
P 		7
avr 6
(2.6) 		2.7
(-2.3) 		2.2
(-3) 		6.3
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 2.6
(-1)
A 		5.5
(1.4)
A 		7.5
(3)
P 		3.2
(-0.5)
A 		0.9
(-2.4)
A 		0.2
(-3)
A 		7
B 9.9
(3)
A 		4.4
(-0.6)
A 		3.6
(-1.2)
A 		0.8
(-3)
A 		5.6
(0.2)
A 		1.5
(-2.5)
A 		9
C 4.2
(0.9)
A 		5.8
(2.5)
M 		2.7
(-0.7)
A 		0.4
(-3)
A 		0.8
(-2.6)
A 		6.3
(3)
A 		6
avr 5.6
(3) 		5.2
(2.4) 		4.6
(1.5) 		1.5
(-3) 		2.4
(-1.7) 		2.7
(-1.2) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186403_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4038
Sequence Type Exemplar sequence
Representative Public ID Y49F6C.2 NCBI
Target Description Y49F6C.2 /REP_DB=WormBase Gene ID /WP=CE22266 /TR=Q9TYI9 /GB=AAD12863.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062124(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062124 NCBI Caenorhabditis elegans Y49F6C.2 (Y49F6C.2) mRNA, complete cds. 11/11 None
GENEFINDER00000037280 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3378956:3379507:1 11/11 None
Y49F6C.2 ENSEMBL cdna:known chromosome:CEL140:II:3378956:3379507:1 gene:Y49F6C.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000037277 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3378954-3379506(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y49F6C.2
Entrez Gene 190085 Entrez gene
SwissProt Q9TYI9 EMBL-EBI
WormBase CE22266 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD12863 Hypothetical protein Y49F6C.2 [Caenorhabditis elegans] ref|NP_494525.1| Y49F6C.2 [Caenorhabditis elegans] 2.0E-71
blast AAF39857 Hypothetical protein F59H6.9 [Caenorhabditis elegans] ref|NP_494156.1| F59H6.9 [Caenorhabditis elegans] 3.0E-22
blast AAD12865 Hypothetical protein Y49F6C.3 [Caenorhabditis elegans] ref|NP_494524.1| Y49F6C.3 [Caenorhabditis elegans] 3.0E-21
Sequence
Target Sequence 
>C. ELEGANS:186403_AT
gatttttgcttataagatcctccaaattcaacattttcgcttcaaatttcgactaagcat
tgtacattttggtcctctatttagttttgaaagaatttttgaaaaatgttggctcatctc
caaaatcgtcctgactgtaagagacatgccttttgcgattcggaaatgtgaggaatttct
ggttgagaaatatgaaaggcccaagcgagatatactcaatattgcaaagcaatatcaact
tgagaacttgaagaaactatgtcttgcaaaaatcaatacgattgatgaaatcaaggcggc
aatggcaggtaatctatctgacatggagccaacagtgctggcggct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTTTTGCTTATAAGATCCTCCAA 230 429 84 Antisense
TATAAGATCCTCCAAATTCAACATT 208 659 94 Antisense
AAATTCAACATTTTCGCTTCAAATT 38 117 107 Antisense
AAGCATTGTACATTTTGGTCCTCTA 525 151 138 Antisense
TTGGTCCTCTATTTAGTTTTGAAAG 218 693 152 Antisense
CATCTCCAAAATCGTCCTGACTGTA 14 213 198 Antisense
TCGTCCTGACTGTAAGAGACATGCC 381 605 209 Antisense
AGAGACATGCCTTTTGCGATTCGGA 706 67 223 Antisense
GAAAGGCCCAAGCGAGATATACTCA 107 361 277 Antisense
GGCGGCAATGGCAGGTAATCTATCT 244 539 378 Antisense
CATGGAGCCAACAGTGCTGGCGGCT 293 209 405 Antisense
Sequence Source Affymetrix Proprietary Database