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[186402_at]

Description K12H6.11 /REP_DB=WormBase Gene ID /WP=CE20014 /TR=Q9N5H6 /GB=AAF39940.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 76      4grp_total > 24      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 40.4
(-3)
A 		63.6
(2.1)
A 		67.5
(3)
A 		61.9
(1.8)
A 		27
B 22.9
(-3)
A 		54.3
(3)
A 		30
(-1.6)
A 		38.4
(-0)
A 		31
C 31.7
(0.2)
A 		6.1
(-3)
A 		33.4
(0.4)
A 		54.4
(3)
A 		48
avr 31.7
(-3) 		41.3
(-0.1) 		43.6
(0.6) 		51.6
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 28.9
(0.7)
A 		5.7
(-3)
A 		35.9
(1.9)
A 		14.8
(-1.5)
A 		18.7
(-0.9)
A 		42.9
(3)
A 		37
B 14.6
(-2.3)
A 		8.5
(-3)
A 		18.8
(-1.8)
A 		26.1
(-1)
A 		33.7
(-0.1)
A 		60.7
(3)
A 		52
C 3.2
(-3)
A 		33
(-0.1)
A 		13.5
(-2)
A 		50
(1.6)
A 		17.7
(-1.6)
A 		63.9
(3)
P 		61
avr 15.6
(-3) 		15.7
(-3) 		22.7
(-1.9) 		30.3
(-0.8) 		23.4
(-1.8) 		55.8
(3) 		40
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 14.7
(1)
A 		13.8
(0.3)
A 		17.6
(3)
A 		9.1
(-3)
A 		9
B 7.3
(-2.7)
A 		13.4
(3)
A 		7
(-3)
A 		8.2
(-1.9)
A 		6
C 10.5
(2.3)
A 		1.7
(-3)
A 		11.7
(3)
A 		9.2
(1.5)
A 		10
avr 10.8
(0.6) 		9.6
(-1.5) 		12.1
(3) 		8.8
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 5.3
(-0.6)
A 		2
(-3)
A 		7.8
(1.1)
A 		3.8
(-1.7)
A 		5.6
(-0.4)
A 		10.4
(3)
A 		8
B 5.1
(-2.3)
A 		2.8
(-3)
A 		4.6
(-2.5)
A 		6.9
(-1.8)
A 		13.7
(0.3)
A 		22.7
(3)
A 		20
C 1.2
(-3)
A 		10.1
(-0.4)
A 		3.4
(-2.3)
A 		10.1
(-0.4)
A 		5.7
(-1.7)
A 		21.4
(3)
P 		20
avr 3.9
(-3) 		5
(-2.5) 		5.3
(-2.4) 		6.9
(-1.7) 		8.3
(-1.2) 		18.2
(3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186402_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4168
Sequence Type Exemplar sequence
Representative Public ID K12H6.11 NCBI
Target Description K12H6.11 /REP_DB=WormBase Gene ID /WP=CE20014 /TR=Q9N5H6 /GB=AAF39940.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061970(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061970 NCBI Caenorhabditis elegans K12H6.11 (K12H6.11) mRNA, complete cds. 11/11 None
SNAP00000024509 ENSEMBL cdna:SNAP chromosome:CEL140:II:2817068:2819122:1 11/11 None
GENEFINDER00000024524 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2817068:2819122:1 11/11 None
K12H6.11 ENSEMBL cdna:known chromosome:CEL140:II:2816975:2819122:1 gene:K12H6.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2816973-2819121(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K12H6.11
Entrez Gene 173626 Entrez gene
SwissProt Q9N5H6 EMBL-EBI
WormBase CE20014 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494371 K12H6.11 [Caenorhabditis elegans] gb|AAF39940.1| Hypothetical protein K12H6.11 [Caenorhabditis elegans] 0.0
blast NP_508956 W01C8.3 [Caenorhabditis elegans] gb|AAG00027.3| Hypothetical protein W01C8.3 [Caenorhabditis elegans] 1.0E-92
blast NP_508956 W01C8.3 [Caenorhabditis elegans] gb|AAG00027.3| Hypothetical protein W01C8.3 [Caenorhabditis elegans] 9.0E-92
blast T26044 hypothetical protein W01C8.3 - Caenorhabditis elegans 3.0E-70
Protein Domains
Database ID Description E-Value
Pfam IPR001214 EMBL-EBI Nuclear protein SET 1.9E-34
Pfam IPR001214 EMBL-EBI Nuclear protein SET 1.9E-34
Sequence
Target Sequence 
>C. ELEGANS:186402_AT
ggaaaaggtttctgcgtctactccgcgagggttatcaagaaaggatcccccgttctggag
ttttctggagaaattacagattacctagcgataaagagcaacgcagatattgagcaatat
tccataatgctttataacaatgaaacgaagctttgtgatttctttagtaaggaggaaaat
cttagctccaagtataaaaagattttgtggagcgcgtatcgatcaaaagcctggatcaac
ccgctgaacagaggcaattgtgctaggtttttctcccatgggtgcaaagcgaacatggag
cttgggagagttttccaaggcggtttttctccagccgacatgaaaatcgtcctgtttgcg
aaggaaatcatcaagccgggaaccgagctcacgtttaactacgggcccagttataaggag
atcttcctgggtaataagtgtctctgcgaggcttgcaagaaggaagctgtgaagaaactg
gagaacgctgtgaaaagaatcctgaaaaattctcgagaccctagtgagcccccgagcaag
aaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAAAAGGTTTCTGCGTCTACTCCG 450 525 637 Antisense
GCGTCTACTCCGCGAGGGTTATCAA 517 247 650 Antisense
GGAGCGCGTATCGATCAAAAGCCTG 55 523 845 Antisense
GGATCAACCCGCTGAACAGAGGCAA 57 511 869 Antisense
AATTGTGCTAGGTTTTTCTCCCATG 233 179 892 Antisense
CAGCCGACATGAAAATCGTCCTGTT 363 203 968 Antisense
GAAATCATCAAGCCGGGAACCGAGC 23 361 1000 Antisense
GAACCGAGCTCACGTTTAACTACGG 84 317 1016 Antisense
AAGTGTCTCTGCGAGGCTTGCAAGA 411 157 1072 Antisense
AAATTCTCGAGACCCTAGTGAGCCC 638 115 1143 Antisense
CTAGTGAGCCCCCGAGCAAGAAAAA 195 221 1157 Antisense
Sequence Source Affymetrix Proprietary Database