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[186401_at]

Description Y105C5A.9 /REP_DB=WormBase Gene ID /WP=CE23190 /TR=Q9NF67 /GB=CAB54988.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 28      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 13.3
(-2.8)
A 		11.4
(-3)
A 		17.9
(-2.4)
A 		77.6
(3)
A 		66
B 39.4
(3)
A 		15.8
(-2.9)
A 		15.2
(-3)
A 		25.9
(-0.3)
A 		24
C 27.5
(-0.8)
A 		62.1
(3)
A 		7.9
(-3)
A 		9
(-2.9)
A 		54
avr 26.7
(0.3) 		29.8
(1.1) 		13.7
(-3) 		37.5
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 95
1 2 3 4 5 6 range
A 59.7
(3)
A 		14
(-2.4)
A 		58.1
(2.8)
A 		51.8
(2.1)
A 		9
(-3)
A 		17
(-2.1)
A 		51
B 103.3
(3)
A 		50.9
(-0.3)
A 		91.3
(2.2)
A 		57
(0.1)
A 		9.9
(-2.9)
A 		8.5
(-3)
A 		95
C 93.5
(3)
A 		12.6
(-3)
A 		14.1
(-2.9)
A 		65.6
(0.9)
A 		71.5
(1.4)
A 		36.2
(-1.2)
A 		81
avr 85.5
(3) 		25.8
(-2.5) 		54.5
(0.1) 		58.1
(0.5) 		30.1
(-2.1) 		20.6
(-3) 		65
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 4.9
(-1.4)
A 		2.5
(-3)
A 		4.7
(-1.5)
A 		11.4
(3)
A 		9
B 12.6
(3)
A 		3.9
(-2.7)
A 		3.5
(-3)
A 		5.5
(-1.7)
A 		9
C 9.1
(-0.2)
A 		17.9
(3)
A 		2.7
(-2.6)
A 		1.5
(-3)
A 		16
avr 8.9
(3) 		8.1
(2.1) 		3.6
(-3) 		6.1
(-0.2) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 11
(1.8)
A 		5
(-1.7)
A 		12.7
(2.8)
A 		13.1
(3)
A 		2.7
(-3)
A 		4.1
(-2.2)
A 		10
B 35.9
(3)
A 		16.9
(-0.5)
A 		22.2
(0.5)
A 		15.1
(-0.8)
A 		4
(-2.9)
A 		3.2
(-3)
A 		33
C 34.6
(3)
A 		3.8
(-3)
A 		3.6
(-3)
A 		13.2
(-1.1)
A 		23.1
(0.8)
A 		12.1
(-1.4)
A 		31
avr 27.2
(3) 		8.6
(-2.4) 		12.8
(-1.2) 		13.8
(-0.9) 		9.9
(-2) 		6.5
(-3) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186401_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8888
Sequence Type Exemplar sequence
Representative Public ID Y105C5A.9 NCBI
Target Description Y105C5A.9 /REP_DB=WormBase Gene ID /WP=CE23190 /TR=Q9NF67 /GB=CAB54988.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070476(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070476 NCBI Caenorhabditis elegans Y105C5A.9 (Y105C5A.9) mRNA, complete cds. 11/11 None
SNAP00000033707 ENSEMBL cdna:SNAP chromosome:CEL140:IV:15633162:15634889:1 11/11 None
GENEFINDER00000033771 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:15633162:15634889:1 11/11 None
Y105C5A.9 ENSEMBL cdna:known chromosome:CEL140:IV:15633162:15634889:1 gene:Y105C5A.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001026765 4/11 Cross Hyb Matching Probes None
SNAP00000042055 4/11 Cross Hyb Matching Probes None
GENEFINDER00000042059 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:15633167-15634895(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y105C5A.9
Entrez Gene 190874 Entrez gene
SwissProt Q9NF67 EMBL-EBI
WormBase CE23190 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54988 Hypothetical protein Y105C5A.9 [Caenorhabditis elegans] ref|NP_502877.1| Y105C5A.9 [Caenorhabditis elegans] 4.0E-60
blast AAY55850 Hypothetical protein C08E3.15 [Caenorhabditis elegans] ref|NP_001021936.1| C08E3.15 [Caenorhabditis elegans] 1.0E-28
blast AAB70971 Hypothetical protein C08E3.13 [Caenorhabditis elegans] gb|AAB70961.1| Hypothetical protein C08E3.1 [Caenorhabditis elegans] ref|NP_494018.1| C08E3.13 [Caenorhabditis elegans] ref|NP_494019.1| C08E3.1 [Caenorhabditis elegans] 4.0E-15
Sequence
Target Sequence 
>C. ELEGANS:186401_AT
tgccaaaatcgaagccgggaaccgtcggaaatgacatggcgggagcacttgctggccgtc
acgacgatgaacctccaatctcttcaaactatcagggacgccctgggaatgccgatccca
attatgcatcagcaacgatgagcgacaagaagcaccagtgtcagacaaaatgtagtggag
aaccagaaactagaaaatctcatactgaagagcagaaggactcacccagcaaacgcgata
ggtaccacggtcgaccggttgcacagaagatcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCCAAAATCGAAGCCGGGAACCGT 481 525 14 Antisense
AATGACATGGCGGGAGCACTTGCTG 705 163 43 Antisense
ACTTGCTGGCCGTCACGACGATGAA 384 99 60 Antisense
TCACGACGATGAACCTCCAATCTCT 571 625 72 Antisense
ATCTCTTCAAACTATCAGGGACGCC 280 19 91 Antisense
TCAGGGACGCCCTGGGAATGCCGAT 152 605 105 Antisense
TGCCGATCCCAATTATGCATCAGCA 346 585 123 Antisense
GAAGAGCAGAAGGACTCACCCAGCA 395 339 220 Antisense
GACTCACCCAGCAAACGCGATAGGT 489 373 232 Antisense
CAAACGCGATAGGTACCACGGTCGA 491 189 243 Antisense
GGTCGACCGGTTGCACAGAAGATCC 467 501 262 Antisense
Sequence Source Affymetrix Proprietary Database