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[186400_s_at]

Description T10B11.6 /REP_DB=WormBase Gene ID /WP=CE18245 /TR=Q9TZH8 /GB=AAC67468.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 57      6grp_high1_10_10 > 74      4grp_highest_8_8 > 30      4grp_high_8_8 > 04      6grp_highest_nonorm > 77      6grp_total > 65      4grp_total > 05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 791
1 2 3 4 range
A 1244.9
(-2.1)
P 		1234.8
(-2.2)
P 		1153.5
(-3)
P 		1777.8
(3)
P 		624
B 1275.5
(-2)
P 		1243.6
(-3)
P 		1392.1
(1.6)
P 		1438.6
(3)
P 		195
C 1381.5
(1.3)
P 		986.4
(-3)
P 		1169.6
(-1)
P 		1532.6
(3)
P 		546
avr 1300.6
(-1) 		1154.9
(-3) 		1238.4
(-1.8) 		1583
(3) 		428

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1084
1 2 3 4 5 6 range
A 1307.5
(-0.5)
P 		1137.1
(-3)
P 		1553
(3)
P 		1308.2
(-0.5)
P 		1173.5
(-2.5)
P 		1508.6
(2.4)
P 		416
B 814.1
(-3)
P 		1154.3
(-0.9)
P 		1579.1
(1.7)
P 		1508.5
(1.2)
P 		1250.5
(-0.3)
P 		1794.9
(3)
P 		981
C 710.7
(-3)
P 		1231.9
(-0.1)
P 		1337
(0.5)
P 		1539.7
(1.7)
P 		1042.3
(-1.1)
P 		1780.2
(3)
P 		1070
avr 944.1
(-3) 		1174.4
(-1.2) 		1489.7
(1.4) 		1452.1
(1.1) 		1155.4
(-1.3) 		1694.6
(3) 		751
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 199
1 2 3 4 range
A 453.3
(3)
P 		268
(-2.8)
P 		301.5
(-1.7)
P 		260.2
(-3)
P 		193
B 406.7
(3)
P 		307.1
(-3)
P 		322.6
(-2)
P 		306.6
(-3)
P 		100
C 457.3
(3)
P 		283.6
(-2.2)
P 		407.6
(1.5)
P 		258.4
(-3)
P 		199
avr 439.1
(3) 		286.2
(-2.6) 		343.9
(-0.5) 		275.1
(-3) 		164

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 428
1 2 3 4 5 6 range
A 241
(-3)
P 		404.4
(3)
P 		338.2
(0.6)
P 		331.8
(0.3)
P 		354.1
(1.2)
P 		367.3
(1.6)
P 		163
B 283.3
(-3)
P 		384.2
(-1.4)
P 		383.5
(-1.4)
P 		399.5
(-1.2)
P 		508.1
(0.5)
P 		669.3
(3)
P 		386
C 263.4
(-3)
P 		375.9
(-1)
P 		340.3
(-1.6)
P 		309.6
(-2.2)
P 		337.3
(-1.7)
P 		596
(3)
P 		333
avr 262.6
(-3) 		388.2
(-0.3) 		354
(-1.1) 		347
(-1.2) 		399.8
(-0.1) 		544.2
(3) 		282
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186400_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2201
Sequence Type Exemplar sequence
Representative Public ID T10B11.6 NCBI
Target Description T10B11.6 /REP_DB=WormBase Gene ID /WP=CE18245 /TR=Q9TZH8 /GB=AAC67468.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059579(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059579 NCBI Caenorhabditis elegans T10B11.6 (T10B11.6) mRNA, complete cds. 11/11 None
SNAP00000021312 ENSEMBL cdna:SNAP chromosome:CEL140:I:6951512:6953490:-1 11/11 None
GENEFINDER00000021320 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6951512:6953490:-1 11/11 None
T10B11.6 ENSEMBL cdna:known chromosome:CEL140:I:6951366:6953490:-1 gene:T10B11.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6951442-6953421(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T10B11.6
Entrez Gene 172424 Entrez gene
SwissProt Q9TZH8 EMBL-EBI
WormBase CE18245 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_491980 T10B11.6 [Caenorhabditis elegans] gb|AAC67468.1| Hypothetical protein T10B11.6 [Caenorhabditis elegans] 0.0
blast CAE60336 Hypothetical protein CBG03928 [Caenorhabditis briggsae] 1.0E-163
blast AAA68802 Hypothetical protein C09B8.4 [Caenorhabditis elegans] ref|NP_509006.2| C09B8.4 [Caenorhabditis elegans] 3.0E-56
Protein Domains
Database ID Description E-Value
Pfam IPR008547 EMBL-EBI Eukaryotic protein of unknown function DUF829 3.2E-119
Sequence
Target Sequence 
>C. ELEGANS:186400_S_AT
ctacatgtcaccacttttcagagcaattgatgcaaaacccggagatttcagatcatttgc
caaatgtccaataattgttcactcattttcaatgaacggagtacgcggattaatttcatt
ttggaaatggacagaagcagaggaaaaaccacaattaagagaacgaattaaaggaattat
tttcgatagtgccccatcgcgcccatatggaaaacaagacgctacggcaatggtcatttc
aactcctccaattgatgcatttgaacgatggattagtgagcaaacgagaatttctgtgct
tacttggttcttgaatctacgagcttacttgcaaatcccacttcttacgatggttccatt
tttacgttcgtttgtgtcaatctactattatcttcaaacacatattgccctgccacgtga
tcaactgtatttatactctaaagctgacactatgatcaaggcgaaacatgtcgagaaatt
cattgaaaaacaaaaagaaaaaggaaattcagtgaccgctattgatttcgtcgactctga
gcatgttgcacacattcgaacacatccaaaagattaccgtacagcttgcctgaactt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTACATGTCACCACTTTTCAGAGCA 175 227 363 Antisense
TTATTTTCGATAGTGCCCCATCGCG 59 679 539 Antisense
CAATGGTCATTTCAACTCCTCCAAT 238 183 590 Antisense
CTACGAGCTTACTTGCAAATCCCAC 137 227 679 Antisense
AATCCCACTTCTTACGATGGTTCCA 321 167 696 Antisense
TCTTCAAACACATATTGCCCTGCCA 144 617 753 Antisense
CCCTGCCACGTGATCAACTGTATTT 70 261 770 Antisense
GACCGCTATTGATTTCGTCGACTCT 135 383 876 Antisense
GTCGACTCTGAGCATGTTGCACACA 2 475 892 Antisense
GTTGCACACATTCGAACACATCCAA 485 439 907 Antisense
ATTACCGTACAGCTTGCCTGAACTT 282 13 935 Antisense
Sequence Source Affymetrix Proprietary Database