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[186399_at]

Description T07C4.10A /REP_DB=WormBase Gene ID /WP=CE21159 /TR=Q22276 /GB=CAA82580.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 79      4grp_total > 01      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 60.3
(-0.7)
A 		28
(-3)
A 		83.7
(1)
A 		111.6
(3)
A 		84
B 68
(-2.7)
A 		65.7
(-3)
A 		87.2
(-0.3)
A 		112.7
(3)
A 		47
C 73.1
(1)
A 		52.6
(-0.7)
A 		24.2
(-3)
A 		97.4
(3)
A 		73
avr 67.1
(-1.1) 		48.8
(-3) 		65
(-1.3) 		107.2
(3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 121
1 2 3 4 5 6 range
A 81.7
(-0.8)
A 		61.1
(-3)
A 		82.9
(-0.7)
A 		116.2
(2.8)
P 		117
(2.9)
A 		117.9
(3)
A 		57
B 46
(-3)
A 		99.2
(1.9)
A 		52.1
(-2.4)
A 		70.4
(-0.8)
A 		110.5
(2.9)
A 		111.6
(3)
P 		66
C 84.6
(0.8)
A 		51.3
(-0.8)
A 		7.7
(-3)
A 		24.6
(-2.2)
A 		67.4
(-0)
A 		129.1
(3)
P 		121
avr 70.8
(-1.1) 		70.5
(-1.1) 		47.6
(-3) 		70.4
(-1.1) 		98.3
(1.2) 		119.5
(3) 		72
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 22
(3)
A 		6.1
(-3)
A 		21.9
(3)
A 		16.3
(0.8)
A 		16
B 21.7
(1.2)
A 		16.2
(-3)
A 		20.2
(0.1)
A 		24
(3)
A 		8
C 24.2
(3)
A 		15.1
(-0.5)
A 		8.4
(-3)
A 		16.4
(0)
A 		16
avr 22.6
(3) 		12.5
(-3) 		16.8
(-0.4) 		18.9
(0.8) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 15.1
(-3)
A 		21.7
(-1)
A 		18
(-2.1)
A 		29.5
(1.3)
P 		35.3
(3)
A 		28.7
(1)
A 		20
B 16
(-2.4)
A 		33
(0.8)
A 		12.7
(-3)
A 		18.6
(-1.9)
A 		44.9
(3)
A 		41.6
(2.4)
P 		32
C 31.4
(1.3)
A 		15.7
(-1)
A 		2
(-3)
A 		5
(-2.6)
A 		21.8
(-0.1)
A 		43.2
(3)
P 		41
avr 20.8
(-0.8) 		23.5
(-0.2) 		10.9
(-3) 		17.7
(-1.5) 		34
(2.2) 		37.8
(3) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186399_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6579
Sequence Type Exemplar sequence
Representative Public ID T07C4.10A NCBI
Target Description T07C4.10A /REP_DB=WormBase Gene ID /WP=CE21159 /TR=Q22276 /GB=CAA82580.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027583(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027583 NCBI Caenorhabditis elegans T07C4.10 (T07C4.10) mRNA, complete cds. 11/11 None
SNAP00000030149 ENSEMBL cdna:SNAP chromosome:CEL140:III:10324066:10325413:1 11/11 None
GENEFINDER00000030166 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10324105:10325413:1 11/11 None
T07C4.10 ENSEMBL cdna:known chromosome:CEL140:III:10320945:10325541:1 gene:T07C4.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10318967-10325409(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T07C4.10
Entrez Gene 176445 Entrez gene
SwissProt Q5CZ46 EMBL-EBI
WormBase CE38103 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAI58650 Hypothetical protein T07C4.10 [Caenorhabditis elegans] emb|CAI59118.1| Hypothetical protein T07C4.10 [Caenorhabditis elegans] ref|NP_001022754.1| T07C4.10 [Caenorhabditis elegans] 0.0
blast CAE56798 Hypothetical protein CBG24610 [Caenorhabditis briggsae] 0.0
blast CAI58650 Hypothetical protein T07C4.10 [Caenorhabditis elegans] emb|CAI59118.1| Hypothetical protein T07C4.10 [Caenorhabditis elegans] ref|NP_001022754.1| T07C4.10 [Caenorhabditis elegans] 1.0E-139
blast CAI58650 Hypothetical protein T07C4.10 [Caenorhabditis elegans] emb|CAI59118.1| Hypothetical protein T07C4.10 [Caenorhabditis elegans] ref|NP_001022754.1| T07C4.10 [Caenorhabditis elegans] 1.0E-132
blast XP_807004 hypothetical protein, conserved [Trypanosoma cruzi] gb|EAN85153.1| hypothetical protein, conserved [Trypanosoma cruzi] 2.0E-35
blast CAG11742 unnamed protein product [Tetraodon nigroviridis] 3.0E-9
blast CAG11742 unnamed protein product [Tetraodon nigroviridis] 4.0E-9
Sequence
Target Sequence 
>C. ELEGANS:186399_AT
ggcggcagcggaagagtttcgcacttattataacgatatgttgaccgaaaacgatgagct
ccgccaccggattgtgcagttggacgaaattcgagaggtggaatcctccaacagcacgaa
gatcgagaagggactccgcgagcagctggagcaagctcagcacgaactggaaaagaaaaa
gcgtgaatacatgtggaagcttcagcagaaggacgagttctacgagattatggatcgcaa
cgtgaaggagacggagaaggagaacaagcgtctgctgcggaagcgaacggaggataagga
aaggatggatgatttcatgctgaacatccgcaaagcgcaggagcaatggaaatatcttcg
tatgcgaaattgccaacgacacacttcaatgatgaatatgctggaatctgtgaagaagaa
gaagcatgaatcacgggatatgaactggcttctacagcgtttcgaggatagcattagaaa
gtacggcgtggcagaactgacgaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCGGCAGCGGAAGAGTTTCGCACT 419 541 2862 Antisense
TGACCGAAAACGATGAGCTCCGCCA 627 565 2903 Antisense
TCCGCCACCGGATTGTGCAGTTGGA 576 595 2921 Antisense
AATCCTCCAACAGCACGAAGATCGA 84 169 2963 Antisense
AGATCGAGAAGGGACTCCGCGAGCA 354 65 2981 Antisense
GGAGCAAGCTCAGCACGAACTGGAA 705 519 3009 Antisense
CAAGCGTCTGCTGCGGAAGCGAACG 676 185 3126 Antisense
CATGCTGAACATCCGCAAAGCGCAG 295 209 3177 Antisense
GCGAAATTGCCAACGACACACTTCA 204 289 3225 Antisense
GAACTGGCTTCTACAGCGTTTCGAG 46 349 3303 Antisense
GTACGGCGTGGCAGAACTGACGACA 306 459 3342 Antisense
Sequence Source Affymetrix Proprietary Database