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[186398_at]

Description R07C3.12 /REP_DB=WormBase Gene ID /WP=CE12544 /TR=O16770 /GB=AAB66241.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 44      4grp_total > 51      6grp_cgc > 45      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 24.7
(-3)
A 		40.7
(1.4)
A 		46.4
(3)
A 		27.4
(-2.3)
A 		22
B 32.1
(3)
A 		27.4
(1.9)
A 		6.1
(-3)
A 		29.6
(2.4)
A 		26
C 18.3
(-0.2)
A 		29.7
(3)
A 		28.6
(2.7)
P 		8.3
(-3)
A 		21
avr 25
(-1.2) 		32.6
(3) 		27
(-0.1) 		21.8
(-3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 29.1
(0.1)
A 		27.6
(-0.3)
A 		24.2
(-1.4)
A 		22.5
(-1.9)
A 		18.8
(-3)
A 		38.7
(3)
A 		20
B 31.7
(0.5)
P 		23.2
(-0.6)
A 		50.3
(3)
A 		5.2
(-3)
A 		14.3
(-1.8)
A 		17.7
(-1.3)
A 		45
C 33.9
(0.4)
A 		25.9
(-1)
A 		48.8
(3)
P 		24.2
(-1.3)
A 		14.1
(-3)
A 		16.6
(-2.6)
A 		35
avr 31.6
(0.8) 		25.6
(-0.7) 		41.1
(3) 		17.3
(-2.6) 		15.7
(-3) 		24.3
(-1) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 9
(0.7)
A 		8.8
(0.6)
A 		12.1
(3)
A 		4
(-3)
A 		8
B 10.3
(3)
A 		6.8
(0.6)
A 		1.4
(-3)
A 		6.3
(0.3)
A 		9
C 6.1
(0.3)
A 		8.5
(2)
A 		10
(3)
P 		1.4
(-3)
A 		9
avr 8.5
(3) 		8
(2.3) 		7.8
(2.1) 		3.9
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 5.4
(-2.9)
A 		9.8
(3)
A 		5.3
(-3)
A 		5.7
(-2.5)
A 		5.7
(-2.5)
A 		9.4
(2.5)
A 		5
B 11
(2.3)
P 		7.7
(0.5)
A 		12.2
(3)
A 		1.4
(-3)
A 		5.8
(-0.6)
A 		6.6
(-0.1)
A 		11
C 12.6
(3)
A 		7.9
(-0.5)
A 		12.4
(2.9)
P 		4.9
(-2.7)
A 		4.5
(-3)
A 		5.6
(-2.2)
A 		8
avr 9.7
(2.7) 		8.5
(1.5) 		10
(3) 		4
(-3) 		5.3
(-1.7) 		7.2
(0.2) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186398_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5633
Sequence Type Exemplar sequence
Representative Public ID R07C3.12 NCBI
Target Description R07C3.12 /REP_DB=WormBase Gene ID /WP=CE12544 /TR=O16770 /GB=AAB66241.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061450(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061450 NCBI Caenorhabditis elegans C-type LECtin family member (clec-44) (clec-44) mRNA, complete cds. 11/11 None
GENEFINDER00000022250 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:919581:922912:-1 11/11 None
R07C3.12 ENSEMBL cdna:known chromosome:CEL140:II:919581:922452:-1 gene:R07C3.12 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000022238 4/11 Cross Hyb Matching Probes None
SNAP00000022239 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:919579-922451(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol clec-44
Ensembl R07C3.12
Entrez Gene 187671 Entrez gene
WormBase CE12544 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_493851 C-type LECtin family member (clec-44) [Caenorhabditis elegans] 0.0
blast AAB66241 C-type lectin protein 44 [Caenorhabditis elegans] 0.0
blast AAB66231 C-type lectin protein 43 [Caenorhabditis elegans] ref|NP_493859.2| C-type LECtin family member (clec-43) [Caenorhabditis elegans] 1.0E-161
blast AAB66231 C-type lectin protein 43 [Caenorhabditis elegans] ref|NP_493859.2| C-type LECtin family member (clec-43) [Caenorhabditis elegans] 1.0E-134
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 4.2E-9
Pfam IPR001304 EMBL-EBI C-type lectin 5.1E-6
Pfam IPR001304 EMBL-EBI C-type lectin 4.2E-9
Pfam IPR001304 EMBL-EBI C-type lectin 5.1E-6
Sequence
Target Sequence 
>C. ELEGANS:186398_AT
aaagccacttgctatagttaccgaaaacactttcgaggtctatagctctactacaaacgt
gcttagagtcgtgttcaactgcaaccccgatgtgagcgtcagacaacatgtatctctgtt
gcaatcgggaagtttcgctggaaaatgggtgtctaatcaaaacgcgctgttgggatatat
atgtcaagttcccttaccgagtagtaccgtaactattgaaactatcaccaccacctacat
aagaagtacaactacaactccacgtagtccagcacgttgtcgcgatgggttcacgagtat
caataataatgcaacttgtgttaagttcatagcgcacaaacactatggaactcctattcc
ttgcacctacataattgttgcaccacaaaactccattcctgaaattcgattcacggatct
gatcatggactcttctaatttgaaaatgatgctctacggagcaattgatgacgtcggccc
attcgcaatacttactaacgatgacgtttataagtactacagttcgtatactaacgtgct
gaaagtgtccttccagtgcaatcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGCCACTTGCTATAGTTACCGAA 362 123 1245 Antisense
TTAGAGTCGTGTTCAACTGCAACCC 498 667 1307 Antisense
CATGTATCTCTGTTGCAATCGGGAA 582 207 1351 Antisense
GGGTGTCTAATCAAAACGCGCTGTT 189 497 1391 Antisense
ATATGTCAAGTTCCCTTACCGAGTA 510 19 1423 Antisense
TATCACCACCACCTACATAAGAAGT 495 657 1467 Antisense
CACGTTGTCGCGATGGGTTCACGAG 383 199 1517 Antisense
CTATGGAACTCCTATTCCTTGCACC 244 225 1587 Antisense
CACCACAAAACTCCATTCCTGAAAT 295 201 1625 Antisense
ACGGATCTGATCATGGACTCTTCTA 123 97 1657 Antisense
TGAAAGTGTCCTTCCAGTGCAATCC 326 573 1784 Antisense
Sequence Source Affymetrix Proprietary Database