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[186397_at]

Description F22E5.10 /REP_DB=WormBase Gene ID /WP=CE09562 /TR=O16704 /GB=AAB66182.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 83      4grp_total > 34      6grp_cgc > 86      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 6.1
(-3)
A 		44.7
(0.1)
A 		18.1
(-2)
A 		80
(3)
A 		74
B 62.3
(0.3)
A 		79.8
(3)
A 		51.5
(-1.4)
A 		40.8
(-3)
A 		39
C 29.2
(-3)
A 		78.2
(3)
A 		57.9
(0.5)
A 		65.9
(1.5)
A 		49
avr 32.5
(-3) 		67.6
(3) 		42.5
(-1.3) 		62.2
(2.1) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 52.5
(1.2)
A 		6.4
(-3)
A 		65.2
(2.3)
A 		34.6
(-0.4)
A 		72.5
(3)
A 		44.5
(0.5)
A 		66
B 54.8
(-0.3)
A 		61.4
(1.1)
A 		42.2
(-3)
A 		54.2
(-0.4)
A 		61.4
(1.1)
A 		70.3
(3)
A 		28
C 41.6
(-1.2)
A 		59.5
(0.6)
A 		58.2
(0.5)
A 		83.4
(3)
A 		37.6
(-1.6)
A 		23.2
(-3)
A 		60
avr 49.6
(-0.1) 		42.4
(-3) 		55.2
(2.1) 		57.4
(3) 		57.2
(2.9) 		46
(-1.6) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 2.2
(-3)
A 		9.7
(1.7)
A 		4.7
(-1.4)
A 		11.7
(3)
A 		10
B 19.9
(3)
A 		19.7
(2.9)
A 		11.9
(-1.3)
A 		8.7
(-3)
A 		11
C 9.7
(-3)
A 		22.5
(3)
A 		20.2
(1.9)
A 		11.1
(-2.3)
A 		13
avr 10.6
(-2.9) 		17.3
(3) 		12.3
(-1.4) 		10.5
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 9.7
(-0.7)
A 		2.3
(-3)
A 		14.2
(0.6)
A 		8.8
(-1)
A 		21.9
(3)
A 		10.8
(-0.4)
A 		20
B 19.1
(0.3)
A 		20.4
(0.8)
A 		10.2
(-3)
A 		14.4
(-1.4)
A 		25
(2.6)
A 		26.2
(3)
A 		16
C 15.4
(1.4)
A 		18.1
(3)
A 		14.8
(1.1)
A 		16.8
(2.2)
A 		12.2
(-0.4)
A 		7.8
(-3)
A 		10
avr 14.7
(-1.5) 		13.6
(-2.5) 		13.1
(-3) 		13.3
(-2.8) 		19.7
(3) 		14.9
(-1.4) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186397_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5505
Sequence Type Exemplar sequence
Representative Public ID F22E5.10 NCBI
Target Description F22E5.10 /REP_DB=WormBase Gene ID /WP=CE09562 /TR=O16704 /GB=AAB66182.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000023625 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2634211:2635322:1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000023604 3/11 Cross Hyb Matching Probes None
F22E5.10 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2634209-2635183(+) 98.88 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T32063 hypothetical protein F22E5.10 - Caenorhabditis elegans 1.0E-121
blast NP_001022422 Serpentine Receptor, class I family member (sri-40) [Caenorhabditis elegans] gb|AAX22282.1| Serpentine receptor, class i protein 40, isoform b [Caenorhabditis elegans] 5.0E-33
blast NP_001022421 Serpentine Receptor, class I family member (sri-40) [Caenorhabditis elegans] gb|AAF60478.4| Serpentine receptor, class i protein 40, isoform a [Caenorhabditis elegans] 5.0E-33
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.2E-22
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.1E-10
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000023625 6 5-27,40-62,127-149,162-184,208-230,242-264
Sequence
Target Sequence 
>C. ELEGANS:186397_AT
gctccgggcttcttgcaaaatacgtctgggctcactaccttgtggtgccagaaccctcta
gctcaagtatggcggcccagatacaatgtctgatatactgttttctgaagaaacatcgga
gcatcggaagaattctggagcgacaggttattcctgacaatatgtttgttttgttggaaa
ttacaacaccggtggctccggtggtggtctttgtgactgtgcttaaagccggactgggga
gagaagagcaaatgggttatctggagaaggcttttgtcatgggcacacttccagtattac
ccgcaactactctcccctcacttcccaaatttggccatctacaacttcaatctatggttc
tccatcatggcatccgtcgcttgctggctcaactggccgccgcttcgctttgcttcggac
ctccgctattaacagtcgtggtggtaatgctcgagtttagatatactcaactgactattc
aatgtctagtggtaatctttgcttctcattctacaattaacgctttggtactggtcctgg
c

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTCCGGGCTTCTTGCAAAATACGT 353 299 230 Antisense
AAAATACGTCTGGGCTCACTACCTT 692 131 246 Antisense
CTCACTACCTTGTGGTGCCAGAACC 685 221 260 Antisense
GAACCCTCTAGCTCAAGTATGGCGG 257 347 280 Antisense
GAAATTACAACACCGGTGGCTCCGG 194 359 406 Antisense
ATGGGCACACTTCCAGTATTACCCG 527 49 508 Antisense
CCTCACTTCCCAAATTTGGCCATCT 172 269 545 Antisense
TATGGTTCTCCATCATGGCATCCGT 538 653 582 Antisense
TCGGACCTCCGCTATTAACAGTCGT 163 605 644 Antisense
AGTGGTAATCTTTGCTTCTCATTCT 539 59 717 Antisense
TTAACGCTTTGGTACTGGTCCTGGC 336 683 746 Antisense
Sequence Source Affymetrix Proprietary Database