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[186396_at]

Description F02E11.4 /REP_DB=WormBase Gene ID /WP=CE09195 /TR=O16573 /GB=AAB66053.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 34      4grp_total > 18      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 4.6
(-2.1)
A 		3.1
(-3)
A 		3.2
(-2.9)
A 		13.4
(3)
A 		10
B 7.2
(-2.4)
A 		26.4
(-0.5)
A 		1.4
(-3)
A 		62.6
(3)
A 		61
C 0.6
(-3)
A 		16.6
(0.4)
A 		13
(-0.4)
A 		28.8
(3)
A 		28
avr 4.1
(-3) 		15.4
(-0.8) 		5.9
(-2.6) 		34.9
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 0.3
(-3)
A 		0.7
(-1.7)
A 		1.9
(2.1)
A 		1.6
(1.1)
A 		2.2
(3)
A 		1.1
(-0.5)
A 		2
B 10.2
(3)
A 		1
(-2.8)
A 		5.4
(-0)
A 		0.7
(-3)
A 		2.5
(-1.9)
A 		2.4
(-1.9)
A 		10
C 1.6
(-2.5)
A 		13.5
(3)
A 		4.3
(-1.2)
A 		1.9
(-2.3)
A 		0.4
(-3)
A 		0.5
(-3)
A 		13
avr 4
(1.3) 		5.1
(3) 		3.9
(1.1) 		1.4
(-2.8) 		1.7
(-2.4) 		1.3
(-3) 		4
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 1.7
(1.6)
A 		0.7
(-3)
A 		0.8
(-2.5)
A 		2
(3)
A 		1
B 2.3
(-2.1)
A 		6.5
(-0.1)
A 		0.3
(-3)
A 		13.3
(3)
A 		13
C 0.2
(-3)
A 		4.8
(2.9)
A 		4.5
(2.5)
A 		4.9
(3)
A 		5
avr 1.4
(-3) 		4
(-0.1) 		1.9
(-2.4) 		6.7
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 0.1
(-3)
A 		0.2
(-1.8)
A 		0.4
(0.6)
A 		0.4
(0.6)
A 		0.6
(3)
A 		0.3
(-0.6)
A 		1
B 3.5
(3)
A 		0.3
(-2.8)
A 		1.3
(-1)
A 		0.2
(-3)
A 		1
(-1.5)
A 		0.9
(-1.7)
A 		3
C 0.6
(-2.3)
A 		4.1
(3)
A 		1.1
(-1.5)
A 		0.4
(-2.6)
A 		0.1
(-3)
A 		0.2
(-2.9)
A 		4
avr 1.4
(2.5) 		1.5
(3) 		0.9
(0) 		0.3
(-3) 		0.6
(-1.5) 		0.5
(-2) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186396_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5064
Sequence Type Exemplar sequence
Representative Public ID F02E11.4 NCBI
Target Description F02E11.4 /REP_DB=WormBase Gene ID /WP=CE09195 /TR=O16573 /GB=AAB66053.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062093(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062093 NCBI Caenorhabditis elegans F02E11.4 (F02E11.4) mRNA, complete cds. 11/11 None
GENEFINDER00000013536 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3274788:3277257:-1 9/11 None
F02E11.4 ENSEMBL cdna:known chromosome:CEL140:II:3276252:3277296:-1 gene:F02E11.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000013527 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3276250-3277295(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F02E11.4
Entrez Gene 184098 Entrez gene
SwissProt O16573 EMBL-EBI
WormBase CE09195 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6298 mismatch repair inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3684 damaged DNA binding inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB66053 Hypothetical protein F02E11.4 [Caenorhabditis elegans] ref|NP_494494.1| F02E11.4 [Caenorhabditis elegans] 3.0E-76
blast AAB66053 Hypothetical protein F02E11.4 [Caenorhabditis elegans] ref|NP_494494.1| F02E11.4 [Caenorhabditis elegans] 4.0E-67
blast AAF60401 Hypothetical protein Y110A2AL.1 [Caenorhabditis elegans] ref|NP_494390.1| Y110A2AL.1 [Caenorhabditis elegans] 5.0E-22
blast AAF60396 Hypothetical protein Y110A2AL.10 [Caenorhabditis elegans] ref|NP_494389.1| Y110A2AL.10 [Caenorhabditis elegans] 7.0E-21
blast AAF60401 Hypothetical protein Y110A2AL.1 [Caenorhabditis elegans] ref|NP_494390.1| Y110A2AL.1 [Caenorhabditis elegans] 8.0E-21
blast AAF60396 Hypothetical protein Y110A2AL.10 [Caenorhabditis elegans] ref|NP_494389.1| Y110A2AL.10 [Caenorhabditis elegans] 3.0E-20
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000013536 1 199-221
Sequence
Target Sequence 
>C. ELEGANS:186396_AT
aagtgccgagtttttgagaatgaaggccaaacatcacgcggagattcaggcactttatga
actgtgcggtaaaatgaaggaaagaggagctctaggaaagctgaagagaacgatcaacga
aaaagtgatagattggaatcggaatggattgagggtcaaagactactatgatctacacgg
aatgacaaccaatggggctgtacgttttgtgttaggcatagttgagaatatgcaatttta
tggaaaaatcaagctggaaaccggaagaggaaatcactcgaaggacaacattccggtgat
caagaacaagttgctgaggacattcaattgccggtcaagatgtaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTGCCGAGTTTTTGAGAATGAAG 286 159 33 Antisense
GAATGAAGGCCAAACATCACGCGGA 421 331 50 Antisense
TCACGCGGAGATTCAGGCACTTTAT 267 625 66 Antisense
GGCACTTTATGAACTGTGCGGTAAA 480 535 81 Antisense
GGTCAAAGACTACTATGATCTACAC 673 501 186 Antisense
TGATCTACACGGAATGACAACCAAT 634 565 201 Antisense
GACAACCAATGGGGCTGTACGTTTT 182 363 216 Antisense
GGGGCTGTACGTTTTGTGTTAGGCA 648 497 226 Antisense
GGACAACATTCCGGTGATCAAGAAC 176 527 315 Antisense
CAAGTTGCTGAGGACATTCAATTGC 409 183 339 Antisense
CATTCAATTGCCGGTCAAGATGTAA 693 213 353 Antisense
Sequence Source Affymetrix Proprietary Database