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[186395_at]

Description C16C4.10 /REP_DB=WormBase Gene ID /WP=CE08206 /TR=O16558 /GB=AAB93655.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 62      4grp_total > 0      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 18.4
(0.2)
A 		24.5
(1.5)
A 		2.6
(-3)
A 		31.9
(3)
A 		29
B 16.5
(-0.7)
A 		21.4
(0)
A 		41.2
(3)
A 		1.2
(-3)
A 		40
C 14.6
(0.5)
A 		1.3
(-3)
A 		9.5
(-0.8)
A 		23.8
(3)
A 		23
avr 16.5
(-1.5) 		15.7
(-3) 		17.8
(0.8) 		19
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 2.1
(-2.7)
A 		8.4
(-1.4)
A 		30.1
(3)
A 		14.3
(-0.2)
A 		2
(-2.7)
A 		0.5
(-3)
A 		30
B 2.9
(-2.7)
A 		9.7
(-1.3)
A 		29.3
(2.6)
A 		31.1
(3)
A 		1.2
(-3)
A 		14.4
(-0.4)
A 		30
C 2.4
(-2)
A 		1.3
(-2.6)
A 		0.7
(-3)
A 		5.3
(-0.3)
A 		10.8
(3)
A 		3.3
(-1.5)
A 		10
avr 2.5
(-3) 		6.5
(-1.6) 		20
(3) 		16.9
(1.9) 		4.7
(-2.2) 		6.1
(-1.8) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 6.7
(3)
A 		5.3
(1.6)
A 		0.7
(-3)
A 		4.7
(1)
A 		6
B 5.3
(0.2)
A 		5.3
(0.2)
A 		9.6
(3)
A 		0.3
(-3)
A 		9
C 4.8
(3)
A 		0.4
(-3)
A 		3.3
(1)
A 		4
(1.9)
A 		4
avr 5.6
(3) 		3.7
(-1.4) 		4.5
(0.5) 		3
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 0.4
(-2.7)
A 		3
(-0.3)
A 		6.6
(3)
A 		3.6
(0.2)
A 		0.6
(-2.5)
A 		0.1
(-3)
A 		7
B 1
(-2.6)
A 		3.2
(-0.9)
A 		7.1
(2.1)
A 		8.2
(3)
A 		0.5
(-3)
A 		5.4
(0.8)
A 		8
C 0.9
(-1.7)
A 		0.4
(-2.6)
A 		0.2
(-3)
A 		1.1
(-1.4)
A 		3.5
(3)
A 		1.1
(-1.4)
A 		3
avr 0.8
(-3) 		2.2
(-0.8) 		4.6
(3) 		4.3
(2.5) 		1.5
(-1.9) 		2.2
(-0.8) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186395_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4208
Sequence Type Exemplar sequence
Representative Public ID C16C4.10 NCBI
Target Description C16C4.10 /REP_DB=WormBase Gene ID /WP=CE08206 /TR=O16558 /GB=AAB93655.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061707(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061707 NCBI Caenorhabditis elegans C16C4.10 (C16C4.10) mRNA, complete cds. 11/11 None
SNAP00000026904 ENSEMBL cdna:SNAP chromosome:CEL140:II:1881613:1882807:-1 11/11 None
GENEFINDER00000026923 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1879701:1882807:-1 11/11 None
C16C4.10 ENSEMBL cdna:known chromosome:CEL140:II:1881613:1882807:-1 gene:C16C4.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1881611-1882806(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C16C4.10
Entrez Gene 182664 Entrez gene
SwissProt O16558 EMBL-EBI
WormBase CE08206 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB93655 Hypothetical protein C16C4.10 [Caenorhabditis elegans] ref|NP_494108.1| C16C4.10 [Caenorhabditis elegans] 1.0E-169
blast AAB93655 Hypothetical protein C16C4.10 [Caenorhabditis elegans] ref|NP_494108.1| C16C4.10 [Caenorhabditis elegans] 1.0E-161
blast AAB71075 Hypothetical protein ZK250.6 [Caenorhabditis elegans] ref|NP_494136.1| ZK250.6 [Caenorhabditis elegans] 1.0E-109
blast AAF60435 Hypothetical protein Y16E11A.1 [Caenorhabditis elegans] ref|NP_494144.2| Y16E11A.1 [Caenorhabditis elegans] 1.0E-109
blast AAB93651 Hypothetical protein C16C4.5 [Caenorhabditis elegans] ref|NP_494101.1| C16C4.5 [Caenorhabditis elegans] 1.0E-105
blast AAB93656 Hypothetical protein C16C4.11 [Caenorhabditis elegans] ref|NP_494109.1| C16C4.11 [Caenorhabditis elegans] 1.0E-104
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 6.3E-48
Pfam IPR002083 EMBL-EBI MATH 9.8E-54
Pfam IPR002083 EMBL-EBI MATH 3.3E-55
Sequence
Target Sequence 
>C. ELEGANS:186395_AT
ggaagaacgtggttggtctgaattcatccgttggaaagaattagagtgtgattacggggt
tgatgatagtattgttgttgaagctcatgtcaaaataattaaaataacctactctccgtg
cattgaaaacgaaaatcagaaaatatttctgttgcatcacactgttaaaaatgtttcaag
tattaaagaaggaggtaactatttcacaaatacagagaaaagattcaatattccatggag
actacaaattcaaagattcaatgaattttttggactatatttgcgatgtgaaaaagaact
atccaatagaaggaactggacaattgaagtggaatatgatctaagattggtgtctctgaa
tggccagagtttatctatcaaaggaacatccacttttgaaaagccaataagttacggcta
ttgcaagtttattagatgggatgatatggaaaataagtatatggtgaacgacagtgtaat
cattggagctctcgtcaagatcaccaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAAGAACGTGGTTGGTCTGAATTC 705 525 294 Antisense
GGTTGGTCTGAATTCATCCGTTGGA 62 509 304 Antisense
TCATCCGTTGGAAAGAATTAGAGTG 705 593 317 Antisense
GAGTGTGATTACGGGGTTGATGATA 679 401 337 Antisense
AGATTCAATGAATTTTTTGGACTAT 180 65 547 Antisense
TTTTGGACTATATTTGCGATGTGAA 158 677 561 Antisense
TCTATCAAAGGAACATCCACTTTTG 170 615 667 Antisense
ATAAGTTACGGCTATTGCAAGTTTA 87 25 700 Antisense
ATTGCAAGTTTATTAGATGGGATGA 239 5 713 Antisense
GACAGTGTAATCATTGGAGCTCTCG 295 369 763 Antisense
TGGAGCTCTCGTCAAGATCACCAAA 264 549 777 Antisense
Sequence Source Affymetrix Proprietary Database