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[186393_at]

Description C33C12.6 /REP_DB=WormBase Gene ID /WP=CE08554 /TR=O16578 /GB=AAB66058.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 35      4grp_total > 19      6grp_cgc > 44      6grp_cgc_sub > 02      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 17.3
(-3)
A 		57.1
(0.1)
A 		49.3
(-0.5)
A 		93.3
(3)
P 		76
B 52.9
(2.6)
A 		51.8
(2.2)
A 		53.9
(3)
A 		38.1
(-3)
A 		16
C 59
(0.5)
P 		42
(-0.6)
A 		3.7
(-3)
A 		99.1
(3)
P 		95
avr 43.1
(-1.9) 		50.3
(-0.9) 		35.6
(-3) 		76.8
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 30
(1.3)
A 		29.6
(1.2)
A 		40.7
(3)
A 		7.6
(-2.3)
A 		3
(-3)
A 		3.6
(-2.9)
A 		38
B 33.4
(2.7)
A 		31.5
(2.3)
A 		34.8
(3)
A 		6.7
(-2.9)
A 		19.8
(-0.1)
A 		6.1
(-3)
A 		29
C 32.1
(-0.3)
A 		62
(3)
A 		30.1
(-0.5)
A 		7.7
(-3)
A 		34.9
(0)
A 		51.6
(1.9)
A 		54
avr 31.8
(1.4) 		41
(3) 		35.2
(2) 		7.3
(-3) 		19.2
(-0.9) 		20.4
(-0.7) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 6.3
(-3)
A 		12.4
(1.9)
A 		12.9
(2.4)
A 		13.7
(3)
P 		7
B 16.9
(3)
A 		12.8
(0.2)
A 		12.5
(0)
A 		8.1
(-3)
A 		9
C 19.5
(3)
P 		12.1
(0.6)
A 		1.3
(-3)
A 		16.7
(2.1)
P 		18
avr 14.2
(3) 		12.4
(1) 		8.9
(-3) 		12.8
(1.4) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 5.5
(-0.1)
A 		10.5
(3)
A 		8.9
(2)
A 		1.9
(-2.4)
A 		0.9
(-3)
A 		0.9
(-3)
A 		10
B 11.6
(3)
A 		10.5
(2.3)
A 		8.5
(1.1)
A 		1.8
(-3)
A 		8.1
(0.9)
A 		2.3
(-2.7)
A 		10
C 11.9
(0.6)
A 		18.9
(3)
A 		7.7
(-0.9)
A 		1.5
(-3)
A 		11.3
(0.4)
A 		17.3
(2.4)
A 		17
avr 9.7
(1.1) 		13.3
(3) 		8.4
(0.5) 		1.7
(-3) 		6.8
(-0.4) 		6.8
(-0.4) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186393_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5296
Sequence Type Exemplar sequence
Representative Public ID C33C12.6 NCBI
Target Description C33C12.6 /REP_DB=WormBase Gene ID /WP=CE08554 /TR=O16578 /GB=AAB66058.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000027208 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2169063:2172722:-1 10/11 None
C33C12.6 ENSEMBL cdna:known chromosome:CEL140:II:2170326:2173220:-1 gene:C33C12.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2170324-2173219(-) 95.43 100.0
Public Domain and Genome References
Ensembl C33C12.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T31962 hypothetical protein C33C12.6 - Caenorhabditis elegans 1.0E-125
blast NP_494963 Serpentine Receptor, class B (beta) family member (srb-3) [Caenorhabditis elegans] gb|AAK68209.1| Serpentine receptor, class b (beta) protein 3 [Caenorhabditis elegans] sp|Q95ZY2|SRB3_CAEEL Serpentine receptor class beta-3 (Protein srb-3) prf||2123261Q chemosensory receptor 9.0E-82
blast T31962 hypothetical protein C33C12.6 - Caenorhabditis elegans 3.0E-77
blast CAE59053 Hypothetical protein CBG02336 [Caenorhabditis briggsae] 1.0E-56
blast NP_494963 Serpentine Receptor, class B (beta) family member (srb-3) [Caenorhabditis elegans] gb|AAK68209.1| Serpentine receptor, class b (beta) protein 3 [Caenorhabditis elegans] sp|Q95ZY2|SRB3_CAEEL Serpentine receptor class beta-3 (Protein srb-3) prf||2123261Q chemosensory receptor 1.0E-46
blast CAE59053 Hypothetical protein CBG02336 [Caenorhabditis briggsae] 2.0E-35
Protein Domains
Database ID Description E-Value
Pfam IPR002184 EMBL-EBI Integral membrane protein Srb, nematode type 1.4E-31
Pfam IPR002184 EMBL-EBI Integral membrane protein Srb, nematode type 6.3E-87
Trans Membrane
ID Number Of Domains Domain Boundaries
C33C12.6 5 23-45,58-80,106-128,141-163,219-241
GENEFINDER00000027208 2 33-55,111-133
Sequence
Target Sequence 
>C. ELEGANS:186393_AT
tcgttccatttttcataacctccaaatgtcaattaataatcaataatacattattaaaat
ggggtcaaatttcggcaatgattgtgatgacgtgttcaatgcttattcctgtcggatttt
cgcttgaacgctttgttgctctgggaagagccaaacattatgaacaaactcaagtgttgc
tggggcctgttattgtggctataattatcgcaatagatttttcaattatcttcgccgtct
ataaagatgaaccatttaccgatcaattctactcatttataatacttccatcatcatcgg
caaagcagctaactaccttcgctcatttgctattattcgaattttctgtaacagtgacaa
tatttgtgagaactatgggagagtcatttttcaatggatctctaaattatgcagttgctc
gtggtgtatattgctcttttccgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGTTCCATTTTTCATAACCTCCAA 648 603 260 Antisense
TGACGTGTTCAATGCTTATTCCTGT 277 571 347 Antisense
ATTCCTGTCGGATTTTCGCTTGAAC 201 9 364 Antisense
CTTGAACGCTTTGTTGCTCTGGGAA 17 219 382 Antisense
AAGTGTTGCTGGGGCCTGTTATTGT 38 159 431 Antisense
TTTCAATTATCTTCGCCGTCTATAA 322 673 479 Antisense
GAACCATTTACCGATCAATTCTACT 18 345 508 Antisense
ATACTTCCATCATCATCGGCAAAGC 481 23 541 Antisense
GCAAAGCAGCTAACTACCTTCGCTC 131 319 559 Antisense
ACCTTCGCTCATTTGCTATTATTCG 367 87 574 Antisense
GTGGTGTATATTGCTCTTTTCCGAC 223 489 680 Antisense
Sequence Source Affymetrix Proprietary Database