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[186391_s_at]

Description C23G10.7 /REP_DB=WormBase Gene ID /WP=CE04053 /TR=Q9GYR6 /GB=AAF99875.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 49      6grp_high1_10_10 > 94      4grp_highest_8_8 > 21      4grp_high_8_8 > 23      6grp_highest_nonorm > 73      6grp_total > 74      4grp_total > 0      6grp_highest_sub > 04_05_06      6grp_high1_sub > In      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 224
1 2 3 4 range
A 289.2
(-3)
P 		345.9
(0.6)
P 		384
(3)
P 		376.3
(2.5)
P 		95
B 384.6
(3)
P 		380.7
(2.6)
P 		366.6
(1.4)
P 		318.3
(-3)
P 		66
C 351.5
(-1.7)
P 		304.6
(-3)
P 		396
(-0.4)
P 		513.5
(3)
P 		209
avr 341.8
(-3) 		343.7
(-2.8) 		382.2
(1) 		402.7
(3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 353
1 2 3 4 5 6 range
A 319.5
(-3)
P 		488.1
(1.2)
P 		559.9
(2.9)
P 		562.4
(3)
P 		460.1
(0.5)
P 		425.1
(-0.4)
P 		243
B 293.6
(-3)
P 		646.1
(3)
P 		435.6
(-0.6)
P 		444.2
(-0.4)
P 		497.3
(0.5)
P 		551.3
(1.4)
P 		353
C 343.1
(-3)
P 		466.6
(-0.3)
P 		364.8
(-2.5)
P 		614.1
(3)
P 		477.2
(-0)
P 		615
(3)
P 		272
avr 318.7
(-3) 		533.6
(2.8) 		453.4
(0.6) 		540.2
(3) 		478.2
(1.3) 		530.5
(2.7) 		222
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 105.3
(3)
P 		75.1
(-0.6)
P 		100.4
(2.4)
P 		55.1
(-3)
P 		50
B 122.6
(3)
P 		94
(-0.1)
P 		84.9
(-1.1)
P 		67.8
(-3)
P 		55
C 116.3
(0.5)
P 		87.6
(-2.9)
P 		138
(3)
P 		86.6
(-3)
P 		51
avr 114.7
(3) 		85.6
(-0.9) 		107.8
(2.1) 		69.8
(-3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 156
1 2 3 4 5 6 range
A 58.9
(-3)
P 		173.6
(3)
P 		121.9
(0.3)
P 		142.6
(1.4)
P 		138.8
(1.2)
P 		103.5
(-0.7)
P 		115
B 102.1
(-3)
P 		215.1
(3)
P 		105.8
(-2.8)
P 		117.7
(-2.2)
P 		202
(2.3)
P 		205.6
(2.5)
P 		113
C 127.2
(-1.2)
P 		142.4
(-0.4)
P 		92.8
(-3)
P 		123.5
(-1.4)
P 		154.4
(0.3)
P 		205.9
(3)
P 		113
avr 96.1
(-3) 		177
(3) 		106.8
(-2.2) 		127.9
(-0.6) 		165.1
(2.1) 		171.7
(2.6) 		81
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186391_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6277
Sequence Type Exemplar sequence
Representative Public ID C23G10.7 NCBI
Target Description C23G10.7 /REP_DB=WormBase Gene ID /WP=CE04053 /TR=Q9GYR6 /GB=AAF99875.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171872, NM_171153
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000025615 ENSEMBL cdna:SNAP chromosome:CEL140:III:6196121:6198346:-1 11/11 None
GENEFINDER00000025632 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6196121:6198772:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_171153 7/11 Cross Hyb Matching Probes None
NM_171872 7/11 Cross Hyb Matching Probes None
C23G10.7a.2 7/11 Cross Hyb Matching Probes None
C23G10.7a.1 7/11 Cross Hyb Matching Probes None
C23G10.7b 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6196119-6198353(-) 99.77 99.77
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T15574 hypothetical protein C23G10.7 - Caenorhabditis elegans 0.0
blast AAZ32804 Hypothetical protein C23G10.7c [Caenorhabditis elegans] 0.0
blast AAZ32803 Hypothetical protein C23G10.7b [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:186391_S_AT
gtatgagtcattcttcgagtggaccgtttcagttgctgaacgacttggatttgatgttaa
aattgacagattggcgattccgagcacgaaaagactttgcattatcggacgtgttccaga
aggaggactatgcccaaatgtggacgaaaccatcaattcaatgactgaaggacaaaagtt
tattgcaagaccaaaggaaatcaaaacaacgaattgtatgaacattcctgtgactgatcg
tgaaagaatcgccaagaaattatttgattttgttttgaattattctgatgcagtcagaga
tggatggcgttgtggaggtgaagttcctttggcccagcttgctgcgcttctcacagaaga
agacaaaaaactaatgaaagatcaggacggaggacttcaaacttttcttcgaaatcaaca
tcaaatctttcacgtataccaagccactgctcgtcttcgtgatttccgtcagccagttgt
tcaaaaacgtcaatcctggaagccaaaaaaggcggaaacgatcagaaaagcaccatgctg
gatgtcacttcatcatccagatggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTATGAGTCATTCTTCGAGTGGACC 500 455 1113 Antisense
TCGAGTGGACCGTTTCAGTTGCTGA 689 601 1127 Antisense
GTTGCTGAACGACTTGGATTTGATG 101 441 1144 Antisense
GACAGATTGGCGATTCCGAGCACGA 459 367 1177 Antisense
TTTGCATTATCGGACGTGTTCCAGA 699 661 1208 Antisense
AGGAGGACTATGCCCAAATGTGGAC 169 57 1233 Antisense
TGAACATTCCTGTGACTGATCGTGA 618 573 1331 Antisense
GTGGAGGTGAAGTTCCTTTGGCCCA 93 491 1424 Antisense
GATCAGGACGGAGGACTTCAAACTT 328 417 1492 Antisense
AAGCACCATGCTGGATGTCACTTCA 592 151 1640 Antisense
GATGTCACTTCATCATCCAGATGGT 483 409 1653 Antisense
Sequence Source Affymetrix Proprietary Database