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[186390_at]

Description Y47H10A.5 /REP_DB=WormBase Gene ID /WP=CE22113 /TR=Q9U2B4 /GB=CAB60387.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 27      4grp_total > 07      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 86.9
(3)
A 		63.1
(-1.2)
A 		56.8
(-2.3)
A 		52.9
(-3)
A 		34
B 46.1
(-0.5)
A 		12.4
(-3)
A 		72.8
(1.5)
A 		93.3
(3)
A 		81
C 95.8
(3)
A 		36.5
(-2.7)
A 		33.3
(-3)
A 		85.3
(2)
A 		63
avr 76.3
(2.9) 		37.3
(-3) 		54.3
(-0.4) 		77.2
(3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 200
1 2 3 4 5 6 range
A 243
(3)
P 		121.2
(-0.8)
P 		81.8
(-2.1)
A 		64.1
(-2.6)
P 		52.5
(-3)
A 		71.8
(-2.4)
A 		191
B 168.7
(3)
P 		158.6
(2.4)
P 		80
(-2.4)
A 		70.6
(-3)
A 		83
(-2.2)
A 		92.2
(-1.7)
M 		98
C 246.6
(3)
P 		121.5
(-0.8)
P 		68.9
(-2.3)
A 		53.9
(-2.8)
A 		47.1
(-3)
A 		121.4
(-0.8)
P 		200
avr 219.4
(3) 		133.8
(-0.2) 		76.9
(-2.4) 		62.9
(-2.9) 		60.9
(-3) 		95.1
(-1.7) 		159
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 31.6
(3)
A 		13.7
(-1.5)
A 		14.8
(-1.2)
A 		7.7
(-3)
A 		24
B 14.7
(1.1)
A 		3.1
(-3)
A 		16.9
(1.9)
A 		19.9
(3)
A 		17
C 31.7
(3)
A 		10.5
(-3)
A 		11.6
(-2.7)
A 		14.4
(-1.9)
A 		21
avr 26
(3) 		9.1
(-3) 		14.4
(-1.1) 		14
(-1.3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 44.8
(3)
P 		43.1
(2.6)
P 		17.8
(-2.6)
A 		16.3
(-2.9)
P 		15.8
(-3)
A 		17.5
(-2.6)
A 		29
B 58.7
(3)
P 		52.8
(2.1)
P 		19.4
(-2.9)
A 		18.7
(-3)
A 		33.7
(-0.8)
A 		34.4
(-0.6)
M 		40
C 91.4
(3)
P 		37.1
(-1)
P 		17.5
(-2.5)
A 		10.8
(-3)
A 		15.2
(-2.7)
A 		40.6
(-0.8)
P 		81
avr 65
(3) 		44.3
(0.5) 		18.2
(-2.6) 		15.3
(-3) 		21.6
(-2.2) 		30.8
(-1.1) 		50
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186390_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2008
Sequence Type Exemplar sequence
Representative Public ID Y47H10A.5 NCBI
Target Description Y47H10A.5 /REP_DB=WormBase Gene ID /WP=CE22113 /TR=Q9U2B4 /GB=CAB60387.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060655(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060655 NCBI Caenorhabditis elegans Y47H10A.5 (Y47H10A.5) mRNA, complete cds. 11/11 None
SNAP00000005128 ENSEMBL cdna:SNAP chromosome:CEL140:I:12103926:12106061:-1 11/11 None
GENEFINDER00000005133 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12103926:12106061:-1 11/11 None
Y47H10A.5 ENSEMBL cdna:known chromosome:CEL140:I:12103918:12106061:-1 gene:Y47H10A.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12103856-12105992(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y47H10A.5
Entrez Gene 173091 Entrez gene
SwissProt Q9U2B4 EMBL-EBI
WormBase CE22113 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60387 Hypothetical protein Y47H10A.5 [Caenorhabditis elegans] ref|NP_493056.1| Y47H10A.5 [Caenorhabditis elegans] 0.0
blast CAB60385 Hypothetical protein Y47H10A.3 [Caenorhabditis elegans] ref|NP_493054.2| Y47H10A.3 [Caenorhabditis elegans] 1.0E-104
blast CAB60385 Hypothetical protein Y47H10A.3 [Caenorhabditis elegans] ref|NP_493054.2| Y47H10A.3 [Caenorhabditis elegans] 1.0E-96
blast CAB60386 Hypothetical protein Y47H10A.4 [Caenorhabditis elegans] ref|NP_493055.1| Y47H10A.4 [Caenorhabditis elegans] 5.0E-96
Sequence
Target Sequence 
>C. ELEGANS:186390_AT
gagcagcttttgagcatcattgcactaaaactgatgatccaataaacgaaaatgaaccgg
tgagaaaagcagtgatgatagcggagattccacgtggaaagggggttcacagtgtgttgt
attccggacaaattgacgcggtagacaatgaagtcaatcgtatgcattatgagctgaaag
tactaagtggaggattaactgagcacttctggaaaacgaaaagctgtatgttttactggc
aagctgtttttggaaaagctgacgttttgattattggctccagaactggaaaatgtccaa
atgaccccaaaaccacatggcctaaagaatggcctccattctccgtttatcaggttgaaa
cactcgaacagaatcaaattccagaaagtgccgccgaggaatgtttgaagaaagtactaa
tggacccagcacctgaatggaaaccattggaaggagaagaaagtgtttgttatttcctgg
atttggttgaggaatatgttaagaacaatggtgactgctacgttttcaccagatccgatg
aaaaccctgactggattgtgaaagaagatgaggaatctgtcgcagagttccgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCAGCTTTTGAGCATCATTGCAC 495 389 386 Antisense
GTTCACAGTGTGTTGTATTCCGGAC 351 445 490 Antisense
GGAGGATTAACTGAGCACTTCTGGA 293 515 574 Antisense
AAATGACCCCAAAACCACATGGCCT 461 119 684 Antisense
AAGAATGGCCTCCATTCTCCGTTTA 377 151 710 Antisense
GAAAGTGCCGCCGAGGAATGTTTGA 113 361 769 Antisense
AGTACTAATGGACCCAGCACCTGAA 342 61 798 Antisense
AAGTGTTTGTTATTTCCTGGATTTG 54 159 846 Antisense
TGACTGCTACGTTTTCACCAGATCC 492 569 897 Antisense
GAAAACCCTGACTGGATTGTGAAAG 20 355 925 Antisense
TGAGGAATCTGTCGCAGAGTTCCGT 411 567 954 Antisense
Sequence Source Affymetrix Proprietary Database