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[186388_s_at]

Description C56G2.15 /REP_DB=WormBase Gene ID /WP=CE01870 /TR=Q09518 /GB=AAA64327.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 63      6grp_high1_10_10 > 37      4grp_highest_8_8 > 01      4grp_high_8_8 > 53      6grp_highest_nonorm > 70      6grp_total > 35      4grp_total > 58      6grp_highest_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 211
1 2 3 4 range
A 257.4
(-0.3)
P 		289.7
(0.8)
P 		354.5
(3)
P 		178.5
(-3)
P 		176
B 236.9
(-1.9)
P 		389.6
(3)
P 		302.6
(0.2)
P 		200.7
(-3)
P 		189
C 322.8
(-1.6)
P 		352.4
(3)
P 		313.8
(-2.9)
P 		313.4
(-3)
P 		39
avr 272.4
(-0.8) 		343.9
(3) 		323.6
(1.9) 		230.9
(-3) 		113

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 356
1 2 3 4 5 6 range
A 515.2
(3)
P 		339.4
(-1.5)
P 		280.7
(-3)
P 		287.2
(-2.8)
P 		336.8
(-1.6)
P 		283.9
(-2.9)
P 		235
B 347.5
(1)
P 		395.5
(2)
P 		385
(1.8)
P 		159.6
(-3)
P 		197.3
(-2.2)
P 		439.9
(3)
P 		280
C 345.8
(2.9)
P 		320.2
(1.8)
P 		347.5
(3)
P 		208.8
(-3)
P 		303.7
(1.1)
P 		295.2
(0.7)
P 		139
avr 402.8
(3) 		351.7
(1.3) 		337.7
(0.9) 		218.5
(-3) 		279.3
(-1) 		339.7
(0.9) 		184
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 93.7
(3)
P 		62.9
(0.3)
P 		92.7
(2.9)
P 		26.1
(-3)
P 		68
B 75.6
(0.7)
P 		96.2
(3)
P 		70.1
(0.1)
P 		42.8
(-3)
P 		53
C 106.8
(2.7)
P 		101.3
(2.1)
P 		109.4
(3)
P 		52.8
(-3)
P 		57
avr 92
(3) 		86.8
(2.4) 		90.7
(2.8) 		40.6
(-3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 122
1 2 3 4 5 6 range
A 95
(0.4)
P 		120.7
(3)
P 		61.1
(-3)
P 		72.8
(-1.8)
P 		101.6
(1.1)
P 		69.1
(-2.2)
P 		60
B 120.9
(0.9)
P 		131.6
(1.4)
P 		93.5
(-0.5)
P 		42.3
(-3)
P 		80.2
(-1.1)
P 		164.1
(3)
P 		122
C 128.2
(3)
P 		97.7
(0.9)
P 		88.4
(0.2)
P 		42
(-3)
P 		98.3
(0.9)
P 		98.8
(1)
P 		86
avr 114.7
(2.8) 		116.7
(3) 		81
(-0.3) 		52.4
(-3) 		93.4
(0.8) 		110.7
(2.4) 		64
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186388_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7162
Sequence Type Exemplar sequence
Representative Public ID C56G2.15 NCBI
Target Description C56G2.15 /REP_DB=WormBase Gene ID /WP=CE01870 /TR=Q09518 /GB=AAA64327.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065990(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065990 NCBI Caenorhabditis elegans C56G2.15 (C56G2.15) mRNA, complete cds. 11/11 None
C56G2.15 ENSEMBL cdna:known chromosome:CEL140:III:6366630:6367759:-1 gene:C56G2.15 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000000626 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6366628-6367758(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C56G2.15
Entrez Gene 175899 Entrez gene
SwissProt Q09518 EMBL-EBI
WormBase CE01870 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
8080 N-acetyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA64327 Hypothetical protein C56G2.15 [Caenorhabditis elegans] ref|NP_498391.1| C56G2.15 [Caenorhabditis elegans] 1.0E-108
blast CAE64414 Hypothetical protein CBG09107 [Caenorhabditis briggsae] 2.0E-31
blast XP_643256 hypothetical protein DDB0169519 [Dictyostelium discoideum] gb|AAS38768.1| similar to Homo sapiens (Human). Putative tumor suppressor [Dictyostelium discoideum] gb|EAL69358.1| hypothetical protein DDB0169519 [Dictyostelium discoideum] 1.0E-17
Protein Families
Method ID Description E-Value
ec AAC6_CITDI (P10051) Aminoglycoside N(6)-acetyltransferase (EC 2.3.1.82) (AAC(6)) 0.0010
Protein Domains
Database ID Description E-Value
Pfam IPR000182 EMBL-EBI GCN5-related N-acetyltransferase 1.7E-17
Sequence
Target Sequence 
>C. ELEGANS:186388_S_AT
gcgatggatctcgtgagcattcacagaaaaaatcatgccgtcagtcccctccaatgtcgt
ttttgttgctcaataaggagaatgacgagatactaggccactcaagaatcacacatcttc
caaatcgtgaccatgccttatggattgagtcagtgatgatcaagaaggatcaacgtggcc
ttggactcgggaaattcttaatgaaatccacagaaaaatggatgacggaaaaaggtttca
atgaagcatatctctcaactgatgatcaatgtcgattttatgaatctcttggttatgaga
aatgcgatccgattgtacactcgacaacagccacttgcatctttccagccatgaatcatt
ttcagaacgcggccgcatccaacccgtccttcctatcaaagatcgcacagccttcagcct
cgtcaacagtctcagcttctgctccaccaccaccaccaccgcctccgatggctccaaaaa
tggtcaccagatccacgtccccgattgtggacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGATGGATCTCGTGAGCATTCACA 253 289 101 Antisense
AGAAAAAATCATGCCGTCAGTCCCC 535 71 125 Antisense
CTAGGCCACTCAAGAATCACACATC 460 225 193 Antisense
TCCAAATCGTGACCATGCCTTATGG 38 589 219 Antisense
GAAGGATCAACGTGGCCTTGGACTC 202 335 264 Antisense
GCGATCCGATTGTACACTCGACAAC 706 289 404 Antisense
CTTGCATCTTTCCAGCCATGAATCA 378 217 434 Antisense
TGAATCATTTTCAGAACGCGGCCGC 327 575 452 Antisense
CCGTCCTTCCTATCAAAGATCGCAC 344 265 484 Antisense
GCCTCCGATGGCTCCAAAAATGGTC 428 277 561 Antisense
AGATCCACGTCCCCGATTGTGGACG 709 65 589 Antisense
Sequence Source Affymetrix Proprietary Database