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[186384_s_at]

Description Y43F11A.1 /REP_DB=WormBase Gene ID /WP=CE21916 /TR=Q9TVU3 /GB=CAB55038.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 77      4grp_total > 08      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 15.6
(-1.5)
A 		19.6
(-0.7)
A 		7.9
(-3)
A 		38.2
(3)
A 		30
B 3
(-3)
A 		3.4
(-2.9)
A 		23.4
(1.9)
A 		28.1
(3)
A 		25
C 3.3
(-3)
A 		10
(-2.1)
A 		16.8
(-1.2)
A 		48
(3)
A 		45
avr 7.3
(-3) 		11
(-2.3) 		16
(-1.3) 		38.1
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 206
1 2 3 4 5 6 range
A 27.2
(-2.1)
A 		2.2
(-3)
A 		6.9
(-2.8)
A 		5.4
(-2.9)
A 		62.9
(-0.8)
A 		164.3
(3)
P 		162
B 6.6
(-2.9)
A 		25.8
(-2.3)
A 		7.2
(-2.8)
A 		2.2
(-3)
A 		44.2
(-1.7)
A 		197.1
(3)
P 		195
C 1.7
(-3)
A 		5.9
(-2.9)
A 		33.3
(-2.1)
A 		39.3
(-1.9)
A 		52.6
(-1.5)
A 		207.8
(3)
P 		206
avr 11.8
(-3) 		11.3
(-3) 		15.8
(-2.8) 		15.6
(-2.9) 		53.2
(-1.6) 		189.7
(3) 		178
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 5.7
(3)
A 		4.3
(0.7)
A 		2.1
(-3)
A 		5.6
(2.8)
A 		4
B 0.9
(-2.9)
A 		0.8
(-3)
A 		5.4
(2.3)
A 		6
(3)
A 		5
C 1.1
(-3)
A 		2.9
(-1.5)
A 		5.8
(1)
A 		8.1
(3)
A 		7
avr 2.6
(-3) 		2.7
(-2.9) 		4.4
(-0.3) 		6.6
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 5
(-2.4)
A 		0.8
(-3)
A 		1.5
(-2.9)
A 		1.4
(-2.9)
A 		19
(-0.2)
A 		40
(3)
P 		39
B 2.3
(-2.9)
A 		8.6
(-2.3)
A 		1.7
(-2.9)
A 		0.6
(-3)
A 		17.9
(-1.6)
A 		73.5
(3)
P 		73
C 0.6
(-3)
A 		1.8
(-2.9)
A 		8.5
(-2.3)
A 		7.9
(-2.4)
A 		17
(-1.6)
A 		69.6
(3)
P 		69
avr 2.6
(-3) 		3.7
(-2.9) 		3.9
(-2.9) 		3.3
(-2.9) 		18
(-1.4) 		61
(3) 		58
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186384_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3522
Sequence Type Exemplar sequence
Representative Public ID Y43F11A.1 NCBI
Target Description Y43F11A.1 /REP_DB=WormBase Gene ID /WP=CE21916 /TR=Q9TVU3 /GB=CAB55038.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064174(11), NM_064177(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064174 NCBI Caenorhabditis elegans Y43F11A.1 (Y43F11A.1) mRNA, complete cds. 11/11 None
NM_064177 NCBI Caenorhabditis elegans Y43F11A.4 (Y43F11A.4) mRNA, complete cds. 11/11 None
SNAP00000033620 ENSEMBL cdna:SNAP chromosome:CEL140:II:12113127:12113901:-1 11/11 None
SNAP00000033622 ENSEMBL cdna:SNAP chromosome:CEL140:II:12120159:12120933:1 11/11 None
GENEFINDER00000033628 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12120309:12120933:1 11/11 None
GENEFINDER00000033632 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12113127:12113751:-1 11/11 None
Y43F11A.1 ENSEMBL cdna:known chromosome:CEL140:II:12113127:12113751:-1 gene:Y43F11A.1 11/11 None
Y43F11A.4 ENSEMBL cdna:known chromosome:CEL140:II:12120309:12120933:1 gene:Y43F11A.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12120305-12120930(+) 100.0 100.0
chrII:12113123-12113748(-) 100.0 100.0
Public Domain and Genome References
Gene Title

Ensembl Y43F11A.1
Y43F11A.4
Entrez Gene 174851 Entrez gene
174852 Entrez gene
SwissProt Q9TVU3 EMBL-EBI
WormBase CE21916 Wormbase
CE21916 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB55041 Hypothetical protein Y43F11A.4 [Caenorhabditis elegans] emb|CAB55038.1| Hypothetical protein Y43F11A.1 [Caenorhabditis elegans] ref|NP_496578.1| Y43F11A.4 [Caenorhabditis elegans] ref|NP_496575.1| Y43F11A.1 [Caenorhabditis elegans] 6.0E-77
blast CAB55041 Hypothetical protein Y43F11A.4 [Caenorhabditis elegans] emb|CAB55038.1| Hypothetical protein Y43F11A.1 [Caenorhabditis elegans] ref|NP_496578.1| Y43F11A.4 [Caenorhabditis elegans] ref|NP_496575.1| Y43F11A.1 [Caenorhabditis elegans] 1.0E-76
blast CAE65159 Hypothetical protein CBG10027 [Caenorhabditis briggsae] 1.0E-17
Sequence
Target Sequence 
>C. ELEGANS:186384_S_AT
tacttctatccgttccaactcaaatgccatcaaggcacgtgctccagcttcagctccaaa
acgtccaacatcagctgaatacgtgaaaaagtacacagaataccttgcaactggacatca
aatccgtcatgctctccaaagactctatgatctcaattgttcgattcaagtgttcgaaga
gtgtcttactgagaaagtgattcttcaaaaatacactgggcaatccgaatatcaatatcc
tgttactttgctcatgaataaattcgatgatcttcgtaaacgggaaattcgtgtcgccaa
tgagaaatggtcaaagaatggagaattgagtgcagcaatgttcacgaataagatggttat
ggaacaacggatgaaggatttggagaaaatggatcagaagactgctaataatttatttgt
tgctgctcttggagactcttgctttattccaaaaaagaaggtggattactcaaagttcaa
gatcacaaagagatccaaatcatctacttccact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACTTCTATCCGTTCCAACTCAAAT 515 643 24 Antisense
AAATGCCATCAAGGCACGTGCTCCA 370 119 45 Antisense
AAAACGTCCAACATCAGCTGAATAC 311 131 81 Antisense
AGAATACCTTGCAACTGGACATCAA 363 75 120 Antisense
TGGACATCAAATCCGTCATGCTCTC 150 549 135 Antisense
CATGCTCTCCAAAGACTCTATGATC 378 211 151 Antisense
AATACACTGGGCAATCCGAATATCA 346 171 233 Antisense
AATATCCTGTTACTTTGCTCATGAA 709 173 257 Antisense
TTGTTGCTGCTCTTGGAGACTCTTG 279 705 440 Antisense
GAGACTCTTGCTTTATTCCAAAAAA 129 393 455 Antisense
GAGATCCAAATCATCTACTTCCACT 643 395 513 Antisense
Sequence Source Affymetrix Proprietary Database