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[186383_at]

Description T19D12.4 /REP_DB=WormBase Gene ID /WP=CE17238 /TR=O76836 /GB=AAC24429.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 50      6grp_high1_10_10 > 16      4grp_highest_8_8 > 34      4grp_high_8_8 > 57      6grp_highest_nonorm > 11      6grp_total > 25      4grp_total > 62      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2779
1 2 3 4 range
A 2826.8
(3)
P 		1483
(-0.7)
P 		2230.3
(1.4)
P 		619.8
(-3)
P 		2207
B 3244.7
(3)
P 		1576.8
(-0.6)
P 		1997.4
(0.3)
P 		499.4
(-3)
P 		2745
C 3197.1
(3)
P 		1276.6
(-1.2)
P 		2180.2
(0.8)
P 		465.4
(-3)
P 		2732
avr 3089.5
(3) 		1445.5
(-0.9) 		2136
(0.8) 		528.2
(-3) 		2561

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2080
1 2 3 4 5 6 range
A 2844.9
(3)
P 		1914.1
(-0)
P 		1217.1
(-2.3)
P 		1021.2
(-2.9)
P 		1009
(-2.9)
P 		990.2
(-3)
P 		1855
B 2556.3
(3)
P 		2067
(1.3)
P 		1777.9
(0.3)
P 		1426.5
(-0.9)
P 		809.1
(-3)
P 		1146.9
(-1.8)
P 		1747
C 2167.4
(3)
P 		2159.5
(3)
P 		1262.3
(-0.9)
P 		1574.1
(0.5)
P 		765
(-3)
P 		1303.3
(-0.7)
P 		1402
avr 2522.9
(3) 		2046.9
(1.3) 		1419.1
(-1) 		1340.6
(-1.3) 		861
(-3) 		1146.8
(-2) 		1662
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 980
1 2 3 4 range
A 1029.2
(3)
P 		321.9
(-1.5)
P 		583
(0.1)
P 		90.7
(-3)
P 		939
B 1034.7
(3)
P 		389.4
(-1.2)
P 		462.8
(-0.7)
P 		106.4
(-3)
P 		928
C 1058.3
(3)
P 		367
(-1.2)
P 		759.9
(1.2)
P 		78.5
(-3)
P 		980
avr 1040.7
(3) 		359.4
(-1.3) 		601.9
(0.2) 		91.9
(-3) 		949

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 648
1 2 3 4 5 6 range
A 524.4
(0.9)
P 		680.7
(3)
P 		265.1
(-2.7)
P 		259
(-2.8)
P 		304.5
(-2.1)
P 		241.1
(-3)
P 		440
B 889.5
(3)
P 		688
(0.8)
P 		431.7
(-1.9)
P 		377.8
(-2.5)
P 		328.7
(-3)
P 		427.7
(-1.9)
P 		561
C 803.3
(3)
P 		658.9
(1.4)
P 		321.3
(-2.2)
P 		316.5
(-2.3)
P 		247.5
(-3)
P 		436.3
(-1)
P 		556
avr 739.1
(3) 		675.9
(2.1) 		339.4
(-2.4) 		317.8
(-2.7) 		293.6
(-3) 		368.4
(-2) 		446
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186383_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5241
Sequence Type Exemplar sequence
Representative Public ID T19D12.4 NCBI
Target Description T19D12.4 /REP_DB=WormBase Gene ID /WP=CE17238 /TR=O76836 /GB=AAC24429.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062947(11), NM_182208(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062947 NCBI Caenorhabditis elegans T19D12.4a (T19D12.4) mRNA, complete cds. 11/11 None
NM_182208 NCBI Caenorhabditis elegans T19D12.4b (T19D12.4) mRNA, complete cds. 11/11 None
SNAP00000003080 ENSEMBL cdna:SNAP chromosome:CEL140:II:6631151:6636928:1 11/11 None
T19D12.4a ENSEMBL cdna:known chromosome:CEL140:II:6631098:6637031:1 gene:T19D12.4 11/11 None
T19D12.4b ENSEMBL cdna:known chromosome:CEL140:II:6633749:6636928:1 gene:T19D12.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_182209 5/11 Cross Hyb Matching Probes None
GENEFINDER00000003093 5/11 Cross Hyb Matching Probes None
GENEFINDER00000003095 6/11 Cross Hyb Matching Probes None
T19D12.4c 5/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
174096 3 2 NM_062947 186383_at (11)
NM_182208 186383_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6631108-6636925(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T19D12.4
Entrez Gene 174096 Entrez gene
SwissProt O76836 EMBL-EBI
WormBase CE17238 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC24429 Hypothetical protein T19D12.4 [Caenorhabditis elegans] ref|NP_495348.1| T19D12.4a [Caenorhabditis elegans] 0.0
blast NP_872009 T19D12.4c [Caenorhabditis elegans] 0.0
blast CAE60673 Hypothetical protein CBG04326 [Caenorhabditis briggsae] 0.0
blast NP_872008 T19D12.4b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 1.2E-35
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 1.2E-35
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495348.1 1 33-55
T19D12.4a 1 33-55
SNAP00000003080 1 20-42
Sequence
Target Sequence 
>C. ELEGANS:186383_AT
acttctcgatgtttgcttatggtgcattcaaaacttcagtaatctccggtttatccgttc
atagttctcaagatatctcaaacttcgctgttacctacgaagactggagaaatggaactt
atttcattacaaccaccacacctgcaccaacaaccactaacaaaccggcaaacttctgga
acaataatctctatacagttgatcaaacgatgatgtcaggagtattcgataccttgggaa
ctcaattcggatgtggacactacagtgacgatacggatcgtatatttgctccaaatctct
tcattttcgcatctgataactttggaacttatgatgcttcagtatggactgatttccaag
ctcaacttcgtaacagatacggatgctgggattgtgctggtacccctacattcttgttca
tttcaagaaacgccgcgggacctccagacacacttgcacttggtcaaacaattcatctga
caactgctgatttggatattgatgcatcggatgatacatcaacacaatcaagcattaacc
agttcaataatcttttgaataccatttgtgtgactgcacttccgacat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTTCTCGATGTTTGCTTATGGTGC 1 105 2477 Antisense
ACTTCAGTAATCTCCGGTTTATCCG 474 87 2509 Antisense
GGTTTATCCGTTCATAGTTCTCAAG 196 503 2524 Antisense
GATATCTCAAACTTCGCTGTTACCT 623 425 2548 Antisense
GAACTTATTTCATTACAACCACCAC 681 347 2591 Antisense
AAATCTCTTCATTTTCGCATCTGAT 72 119 2769 Antisense
GACTGATTTCCAAGCTCAACTTCGT 405 373 2823 Antisense
TGCTGGGATTGTGCTGGTACCCCTA 684 577 2860 Antisense
TACCCCTACATTCTTGTTCATTTCA 643 649 2877 Antisense
AGACACACTTGCACTTGGTCAAACA 41 73 2922 Antisense
ATTTGTGTGACTGCACTTCCGACAT 87 17 3040 Antisense
Sequence Source Affymetrix Proprietary Database