[Home] | [Total List]

[186382_at]

Description R09E12.1 /REP_DB=WormBase Gene ID /WP=CE12642 /TR=O16261 /GB=AAG24170.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 06      4grp_total > 43      6grp_cgc > 13      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 8.2
(-3)
A 		47.5
(3)
A 		10.8
(-2.6)
A 		9.9
(-2.7)
A 		39
B 12.7
(-2.8)
A 		69.9
(3)
A 		11
(-3)
A 		17.8
(-2.3)
A 		59
C 31
(3)
A 		11.1
(-1.1)
A 		2.2
(-3)
A 		4.8
(-2.5)
A 		29
avr 17.3
(-1.4) 		42.8
(3) 		8
(-3) 		10.8
(-2.5) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 55.1
(3)
A 		34.3
(0.6)
A 		5.4
(-2.7)
A 		4.2
(-2.9)
A 		4.7
(-2.8)
A 		3
(-3)
A 		52
B 5.9
(0.1)
A 		3.9
(-2.6)
A 		8.1
(3)
A 		3.6
(-3)
A 		4.8
(-1.4)
A 		4.6
(-1.7)
A 		5
C 18.8
(3)
A 		4.6
(-2.6)
A 		3.6
(-3)
A 		14
(1.1)
A 		6.8
(-1.7)
A 		3.7
(-3)
A 		15
avr 26.6
(3) 		14.3
(-0.2) 		5.7
(-2.5) 		7.3
(-2.1) 		5.4
(-2.6) 		3.8
(-3) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 3
(-1.9)
A 		10.3
(3)
A 		2.8
(-2.1)
A 		1.4
(-3)
A 		9
B 4.1
(-2.4)
A 		17.3
(3)
A 		2.5
(-3)
A 		3.8
(-2.5)
A 		15
C 10.3
(3)
A 		3.2
(-1.5)
A 		0.8
(-3)
A 		0.8
(-3)
A 		10
avr 5.8
(-0.3) 		10.3
(3) 		2
(-3) 		2
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 10.2
(2)
A 		12.2
(3)
A 		1.2
(-2.7)
A 		1.1
(-2.8)
A 		1.4
(-2.6)
A 		0.7
(-3)
A 		12
B 2.1
(3)
A 		1.3
(-1.4)
A 		2
(2.5)
A 		1
(-3)
A 		2
(2.5)
A 		1.7
(0.8)
A 		1
C 7
(3)
A 		1.4
(-2.5)
A 		0.9
(-3)
A 		2.8
(-1.1)
A 		2.2
(-1.7)
A 		1.2
(-2.7)
A 		6
avr 6.4
(3) 		5
(1.4) 		1.4
(-2.8) 		1.6
(-2.5) 		1.9
(-2.2) 		1.2
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186382_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15255
Sequence Type Exemplar sequence
Representative Public ID R09E12.1 NCBI
Target Description R09E12.1 /REP_DB=WormBase Gene ID /WP=CE12642 /TR=O16261 /GB=AAG24170.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028903
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028903 NCBI Caenorhabditis elegans Serpentine Receptor, class BC (class B-like) family member (srbc-60) (srbc-60) mRNA, complete cds. None
R09E12.8 ENSEMBL cdna:known chromosome:CEL140:V:780129:781633:1 gene:R09E12.8 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:778468-782338(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srbc-60
Ensembl R09E12.8
Entrez Gene 3564820 Entrez gene
SwissProt Q5F4U8 EMBL-EBI
WormBase CE38094 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAW88392 Serpentine receptor, class bc (class b-like) protein 60 [Caenorhabditis elegans] ref|NP_001024074.1| Serpentine Receptor, class BC (class B-like) family member (srbc-60) [Caenorhabditis elegans] 1.0E-139
blast T03901 hypothetical protein R09E12.1 - Caenorhabditis elegans 1.0E-84
blast AAG24171 Serpentine receptor, class bc (class b-like) protein 58 [Caenorhabditis elegans] ref|NP_503323.1| Serpentine Receptor, class BC (class B-like) family member (srbc-58) [Caenorhabditis elegans] 2.0E-65
Protein Domains
Database ID Description E-Value
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 3.8E-90
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001024074.1 6 10-32,45-67,82-101,122-144,178-200,213-235
R09E12.8 6 10-32,45-67,82-101,122-144,178-200,213-235
Sequence
Target Sequence 
>C. ELEGANS:186382_AT
tcatgacttccgaccgagtttttgcatcctttttcccaatttattatcataaatatcgat
cgcattgccctaccgcaacaattttattactaatgtgcgcctatacagttttcgagcaat
acattctatttgtgatgtgcgattttacaatcgatgtaccaagtagttgtatgcatttgg
gatgtacagttagtaaatgctattttgagtattggttgtggtttgagcaggccaccaaaa
tcgctttactggacacttttattctcttcacttttgatctactaccctcctttctctttt
ctcacttccccgccatcaattttgaaacagtgggcccgctgagcgcagtttgcaagaatg
ctggatttgttattgagtcgttttttccagctaaaaatatgactaacaaaaaatatttta
tgttctctccaaaaataaattccaaaataaatatgaattattctcatctgaatagtgtga
aattgaatgaagctgattactcatttttccagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCATGACTTCCGACCGAGTTTTTGC 72 623 1055 Antisense
GCATCCTTTTTCCCAATTTATTATC 364 303 1078 Antisense
TAAATATCGATCGCATTGCCCTACC 17 641 1104 Antisense
TGCCCTACCGCAACAATTTTATTAC 561 583 1120 Antisense
ATGTGCGCCTATACAGTTTTCGAGC 580 49 1147 Antisense
GAGCAGGCCACCAAAATCGCTTTAC 567 389 1279 Antisense
TTTACTGGACACTTTTATTCTCTTC 471 673 1299 Antisense
TATTCTCTTCACTTTTGATCTACTA 683 663 1314 Antisense
TTTTGAAACAGTGGGCCCGCTGAGC 126 679 1374 Antisense
GTTATTGAGTCGTTTTTTCCAGCTA 508 447 1423 Antisense
GAAGCTGATTACTCATTTTTCCAGT 536 341 1543 Antisense
Sequence Source Affymetrix Proprietary Database