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[186380_at]

Description F26A1.11 /REP_DB=WormBase Gene ID /WP=CE02679 /TR=Q19800 /GB=AAA68252.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 32      4grp_total > 52      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 44.1
(3)
A 		39.6
(2.3)
A 		37.2
(1.9)
A 		5.8
(-3)
A 		38
B 32.2
(3)
A 		28.2
(1.7)
A 		18.9
(-1.3)
A 		13.8
(-3)
A 		18
C 48.3
(0.4)
A 		75.5
(3)
M 		24.6
(-1.8)
A 		12.5
(-3)
A 		63
avr 41.5
(2) 		47.8
(3) 		26.9
(-0.4) 		10.7
(-3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 55.6
(1.8)
A 		24.8
(-2.2)
A 		47.3
(0.7)
P 		64.3
(3)
A 		56.8
(2)
A 		19.1
(-3)
A 		45
B 20.2
(1.6)
A 		6.8
(-3)
A 		8.7
(-2.3)
A 		7.5
(-2.8)
A 		12.8
(-0.9)
A 		24.3
(3)
A 		18
C 18.3
(-1.8)
A 		56.4
(3)
P 		45.5
(1.6)
A 		28.4
(-0.5)
A 		25.7
(-0.8)
A 		8.5
(-3)
A 		48
avr 31.4
(2.1) 		29.3
(1.4) 		33.8
(3) 		33.4
(2.9) 		31.8
(2.3) 		17.3
(-3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 16.1
(3)
A 		8.6
(0.1)
A 		9.7
(0.5)
A 		0.8
(-3)
A 		15
B 10.3
(3)
A 		7
(0.3)
A 		4.4
(-1.8)
A 		2.9
(-3)
A 		7
C 16
(1.3)
A 		21.7
(3)
M 		8.6
(-1)
A 		2.1
(-3)
A 		20
avr 14.1
(3) 		12.4
(2.2) 		7.6
(-0.2) 		1.9
(-3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 10.3
(-0.3)
A 		8.8
(-1)
A 		10.3
(-0.3)
P 		16.3
(2.6)
A 		17.1
(3)
A 		4.7
(-3)
A 		12
B 7
(1.2)
A 		2.3
(-2.7)
A 		2.1
(-2.9)
A 		2
(-3)
A 		5.2
(-0.3)
A 		9.1
(3)
A 		7
C 6.8
(-1.4)
A 		17.2
(3)
P 		11.6
(0.7)
A 		5.7
(-1.8)
A 		8.3
(-0.7)
A 		2.9
(-3)
A 		14
avr 8
(0.1) 		9.4
(2) 		8
(0.1) 		8
(0.1) 		10.2
(3) 		5.6
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186380_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7845
Sequence Type Exemplar sequence
Representative Public ID F26A1.11 NCBI
Target Description F26A1.11 /REP_DB=WormBase Gene ID /WP=CE02679 /TR=Q19800 /GB=AAA68252.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065600(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065600 NCBI Caenorhabditis elegans F26A1.11 (F26A1.11) mRNA, complete cds. 11/11 None
SNAP00000001878 ENSEMBL cdna:SNAP chromosome:CEL140:III:4840696:4842234:-1 10/11 None
GENEFINDER00000001896 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4840911:4842234:-1 10/11 None
F26A1.11 ENSEMBL cdna:known chromosome:CEL140:III:4841000:4843017:-1 gene:F26A1.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4840999-4841953(-) 73.47 86.94
Public Domain and Genome References
Gene Title
Ensembl F26A1.11
Entrez Gene 184950 Entrez gene
SwissProt Q19800 EMBL-EBI
WormBase CE02679 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_498001 F26A1.11 [Caenorhabditis elegans] gb|AAA68252.1| Hypothetical protein F26A1.11 [Caenorhabditis elegans] 1.0E-117
blast NP_498001 F26A1.11 [Caenorhabditis elegans] gb|AAA68252.1| Hypothetical protein F26A1.11 [Caenorhabditis elegans] 6.0E-90
blast NP_498001 F26A1.11 [Caenorhabditis elegans] gb|AAA68252.1| Hypothetical protein F26A1.11 [Caenorhabditis elegans] 7.0E-85
blast CAE71113 Hypothetical protein CBG17966 [Caenorhabditis briggsae] 2.0E-55
blast CAE71113 Hypothetical protein CBG17966 [Caenorhabditis briggsae] 2.0E-50
blast CAE71115 Hypothetical protein CBG17968 [Caenorhabditis briggsae] 1.0E-43
Sequence
Target Sequence 
>C. ELEGANS:186380_AT
ctccaccacgacagccaagatgtgaagctgggtggacacttgtacagaggcagaatggtg
gatggtgtataagaatattccagggaattacgaatcaaccacaatcagaagcaatctgca
atcaaaatggagctcgtctatcagctgtggagagtcaaagagagcgggaaatagttcgag
acttgggtaccaagtatatgacaactacgtctaactggaaacaaggatcattgagactcg
gaatgcaaagagccaatgtacaaagtgcatttctccctactgatcagaatgcaagaggag
ttgatggtattcgctggaccccgaatgaaccgagaccaggagaaagcagatggggttact
ataactgtgttctgatgtggatgaagttgccgggagctggcgcagttgagcaacgtcagc
atggagaaatgtttgcaaaagtatgccatcagacatggactggagcattcagggcttcgt
ttgtggtaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCCACCACGACAGCCAAGATGTGA 496 235 182 Antisense
GAAGCTGGGTGGACACTTGTACAGA 303 343 205 Antisense
GGAGCTCGTCTATCAGCTGTGGAGA 660 519 310 Antisense
GACAACTACGTCTAACTGGAAACAA 631 363 381 Antisense
TACAAAGTGCATTTCTCCCTACTGA 78 643 440 Antisense
GAGTTGATGGTATTCGCTGGACCCC 513 397 479 Antisense
TGGACCCCGAATGAACCGAGACCAG 678 545 496 Antisense
GGATGAAGTTGCCGGGAGCTGGCGC 104 515 560 Antisense
GGAGCTGGCGCAGTTGAGCAACGTC 628 521 574 Antisense
GGACTGGAGCATTCAGGGCTTCGTT 143 525 638 Antisense
GCATTCAGGGCTTCGTTTGTGGTAA 585 305 646 Antisense
Sequence Source Affymetrix Proprietary Database