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[186379_at]

Description C16C8.13 /REP_DB=WormBase Gene ID /WP=CE08224 /TR=P91052 /GB=AAB37855.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 01      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 17.4
(-1.5)
A 		1.7
(-3)
A 		16.4
(-1.6)
A 		63.7
(3)
P 		62
B 9.6
(-0.6)
A 		3.8
(-2.6)
A 		2.5
(-3)
A 		20.1
(3)
A 		18
C 13.9
(-2.1)
A 		1.4
(-3)
A 		11.3
(-2.3)
A 		83.9
(3)
P 		83
avr 13.6
(-1.7) 		2.3
(-3) 		10.1
(-2.1) 		55.9
(3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 2.3
(-3)
A 		2.5
(-3)
A 		28.3
(0.4)
A 		24.7
(-0.1)
A 		35.9
(1.3)
P 		48.7
(3)
P 		46
B 8.7
(-2.5)
A 		2.5
(-3)
A 		3.5
(-2.9)
A 		35
(-0.2)
M 		44
(0.6)
P 		72.6
(3)
P 		70
C 31.2
(-0.3)
A 		18.5
(-1.7)
A 		18.6
(-1.7)
A 		7.5
(-3)
A 		40.6
(0.8)
M 		60.2
(3)
P 		53
avr 14.1
(-2.3) 		7.8
(-3) 		16.8
(-2) 		22.4
(-1.3) 		40.2
(0.7) 		60.5
(3) 		53
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 6.3
(1)
A 		0.4
(-3)
A 		4.3
(-0.4)
A 		9.3
(3)
P 		9
B 3.1
(1.1)
A 		0.9
(-2.5)
A 		0.6
(-3)
A 		4.3
(3)
A 		4
C 4.6
(-1.2)
A 		0.4
(-3)
A 		3.9
(-1.5)
A 		14.1
(3)
P 		14
avr 4.7
(-0.1) 		0.6
(-3) 		2.9
(-1.4) 		9.2
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 0.4
(-3)
A 		0.9
(-2.7)
A 		6.2
(0)
A 		6.3
(0.1)
A 		10.8
(2.4)
P 		11.9
(3)
P 		12
B 3
(-2.5)
A 		0.8
(-3)
A 		0.9
(-3)
A 		9.3
(-1.1)
M 		17.9
(0.9)
P 		27.1
(3)
P 		26
C 11.6
(0.2)
A 		5.7
(-1.7)
A 		4.7
(-2)
A 		1.5
(-3)
A 		13.1
(0.7)
M 		20.2
(3)
P 		19
avr 5
(-2.1) 		2.5
(-3) 		3.9
(-2.5) 		5.7
(-1.9) 		13.9
(1) 		19.7
(3) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186379_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4850
Sequence Type Exemplar sequence
Representative Public ID C16C8.13 NCBI
Target Description C16C8.13 /REP_DB=WormBase Gene ID /WP=CE08224 /TR=P91052 /GB=AAB37855.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062145(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062145 NCBI Caenorhabditis elegans C16C8.13 (C16C8.13) mRNA, complete cds. 11/11 None
GENEFINDER00000014800 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3451416:3452324:1 11/11 None
C16C8.13 ENSEMBL cdna:known chromosome:CEL140:II:3451416:3452324:1 gene:C16C8.13 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000014781 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3451414-3452323(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C16C8.13
Entrez Gene 182679 Entrez gene
SwissProt P91052 EMBL-EBI
WormBase CE08224 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37855 Hypothetical protein C16C8.13 [Caenorhabditis elegans] ref|NP_494546.1| C16C8.13 [Caenorhabditis elegans] 1.0E-136
blast AAB37856 Hypothetical protein C16C8.14 [Caenorhabditis elegans] ref|NP_494545.1| C16C8.14 [Caenorhabditis elegans] 2.0E-66
blast AAB37858 Hypothetical protein C16C8.16 [Caenorhabditis elegans] ref|NP_494544.1| C16C8.16 [Caenorhabditis elegans] 7.0E-54
Protein Domains
Database ID Description E-Value
Pfam IPR000626 EMBL-EBI Ubiquitin 3.4E-19
Sequence
Target Sequence 
>C. ELEGANS:186379_AT
acaagaacaccctggaaatgtgccagaaaattttaaagaaacaacacggatttcaaaaaa
cccaggaaaatcaaaacaaattcattgaacatttgatattggatttggagtctgtcaaaa
aagaaactagtgatatgaaaaagcaacaagagactcagattttgaagagacaagacgaat
atcacgacgagatgaagcaagaatttcaaaaaatccaggcaactcaaaataaattgatcg
aagatttgatgaattcggataaaaatctggaaatgatgttgaaaattcaggaaggtcaaa
atcaaatgatgatgaagattatgcaaagatcagctgtgcatgacgtcccaattgaaactg
gagaattggcaaagaatgtctcatttttttatatttttgtttactggtccgattcgcatg
gcacattagcgtctggaaactatcgaaatctttgggtgcgcggatcggacacaattcgac
aagtcaaactgaccatcaattcacttgcaaacgtagatatcagctcgttcagaatggtgc
ttcgtgataaagttctcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAAGAACACCCTGGAAATGTGCCA 249 113 122 Antisense
CAAAGATCAGCTGTGCATGACGTCC 242 193 445 Antisense
GAATGTCTCATTTTTTTATATTTTT 375 331 495 Antisense
TATATTTTTGTTTACTGGTCCGATT 312 661 511 Antisense
TTACTGGTCCGATTCGCATGGCACA 269 683 522 Antisense
GCATGGCACATTAGCGTCTGGAAAC 263 311 537 Antisense
AGCGTCTGGAAACTATCGAAATCTT 298 81 549 Antisense
CGAAATCTTTGGGTGCGCGGATCGG 213 253 565 Antisense
GCGCGGATCGGACACAATTCGACAA 291 287 579 Antisense
GCAAACGTAGATATCAGCTCGTTCA 168 319 628 Antisense
ATGGTGCTTCGTGATAAAGTTCTCG 31 49 655 Antisense
Sequence Source Affymetrix Proprietary Database