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[186378_at]

Description F40G9.12 /REP_DB=WormBase Gene ID /WP=CE19859 /TR=Q9TZ76 /GB=AAC68791.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 64      4grp_total > 27      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 32.3
(3)
A 		28.6
(2)
A 		11
(-3)
A 		22.4
(0.2)
A 		21
B 7.1
(-3)
A 		26.3
(2.8)
A 		24.3
(2.2)
A 		27
(3)
A 		20
C 8.6
(-2.3)
A 		29.9
(0.6)
A 		3.7
(-3)
A 		47.6
(3)
A 		44
avr 16
(-2.1) 		28.3
(1.8) 		13
(-3) 		32.3
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 25.2
(1.7)
A 		7.6
(-3)
A 		20
(0.3)
A 		30.1
(3)
A 		19.6
(0.2)
A 		29.4
(2.8)
A 		23
B 10.4
(-1.5)
A 		27.6
(3)
A 		24.5
(2.2)
A 		5.7
(-2.7)
A 		4.7
(-3)
A 		20.2
(1.1)
A 		23
C 4.4
(-3)
A 		8.6
(-2.3)
A 		38.2
(3)
A 		15
(-1.1)
A 		12.2
(-1.6)
A 		22.8
(0.3)
A 		34
avr 13.3
(-2.6) 		14.6
(-2.1) 		27.6
(3) 		16.9
(-1.2) 		12.2
(-3) 		24.1
(1.6) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 11.7
(3)
A 		6.2
(-0.8)
A 		2.9
(-3)
A 		3.3
(-2.7)
A 		9
B 2.3
(-3)
A 		6.5
(3)
A 		5.6
(1.7)
A 		5.8
(2)
A 		4
C 2.9
(-1.7)
A 		8.6
(3)
A 		1.3
(-3)
A 		8
(2.5)
A 		7
avr 5.6
(0.6) 		7.1
(3) 		3.3
(-3) 		5.7
(0.8) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 4.6
(-0.7)
A 		2.7
(-3)
A 		4.3
(-1)
A 		7.6
(3)
A 		5.9
(0.9)
A 		7.1
(2.4)
A 		5
B 3.6
(-1.4)
A 		9.2
(3)
A 		5.9
(0.4)
A 		1.5
(-3)
A 		1.9
(-2.7)
A 		7.5
(1.7)
A 		8
C 1.6
(-3)
A 		2.6
(-2.3)
A 		9.7
(3)
A 		3
(-2)
A 		4
(-1.2)
A 		7.6
(1.4)
A 		8
avr 3.3
(-3) 		4.8
(-0.8) 		6.6
(1.8) 		4
(-2) 		3.9
(-2.1) 		7.4
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186378_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8142
Sequence Type Exemplar sequence
Representative Public ID F40G9.12 NCBI
Target Description F40G9.12 /REP_DB=WormBase Gene ID /WP=CE19859 /TR=Q9TZ76 /GB=AAC68791.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064766(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064766 NCBI Caenorhabditis elegans F40G9.12 (F40G9.12) mRNA, complete cds. 11/11 None
F40G9.12 ENSEMBL cdna:known chromosome:CEL140:III:172086:174183:1 gene:F40G9.12 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000021767 2/11 Cross Hyb Matching Probes None
GENEFINDER00000021786 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:172085-174183(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F40G9.12
Entrez Gene 185559 Entrez gene
SwissProt Q9TZ76 EMBL-EBI
WormBase CE19859 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC68791 Hypothetical protein F40G9.12 [Caenorhabditis elegans] ref|NP_497167.1| F40G9.12 [Caenorhabditis elegans] 1.0E-133
blast AAC68803 Hypothetical protein F40G9.14 [Caenorhabditis elegans] ref|NP_497169.1| F40G9.14 [Caenorhabditis elegans] 4.0E-32
blast AAK68897 Hypothetical protein Y54F10BM.6 [Caenorhabditis elegans] ref|NP_497528.1| Y54F10BM.6 [Caenorhabditis elegans] 1.0E-16
Protein Domains
Database ID Description E-Value
Pfam IPR001841 EMBL-EBI Zn-finger, RING 4.5E-6
Sequence
Target Sequence 
>C. ELEGANS:186378_AT
gacctctggggatcactgtccgagggtccttagttgcggtcatacctactgtgaaatctg
tattcaagaacttgcaagtctccggaacaatgtgcactggattttgacgtcttttcgagt
ttcgagtgccttcccgacaaacttcttagtcttggagatacttaacggaaaagctaagga
catgctgcaatgtggggtctgccagctgacctattcttcgcaaaggatccctagaatcca
tccatcctgtggtaaaagtgtctgtgaggattgtaaggagcacgagtgtaaagcttgtga
acctcccaatgagcagtctctatacagactagtaatggctagattggcaggaaatgtaaa
ttggaagtcagatgtgcccatcaactacacaatcagagattttttggaggagcccaaatg
tggaaattgcggcctcaagtacaagcctactgggaacatggctccgcgagttctaaactg
tgggcactcttgttgcggaggttgtattaagaaacttgtcgggcagatgacttgggctgg
ga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACCTCTGGGGATCACTGTCCGAGG 76 383 93 Antisense
AGGGTCCTTAGTTGCGGTCATACCT 315 1 115 Antisense
GTGCACTGGATTTTGACGTCTTTTC 341 481 184 Antisense
GCAATGTGGGGTCTGCCAGCTGACC 393 321 279 Antisense
CCTAGAATCCATCCATCCTGTGGTA 379 269 322 Antisense
GTGAACCTCCCAATGAGCAGTCTCT 78 481 389 Antisense
ATTGCGGCCTCAAGTACAAGCCTAC 438 5 518 Antisense
AGCCTACTGGGAACATGGCTCCGCG 505 81 536 Antisense
GGCTCCGCGAGTTCTAAACTGTGGG 670 539 552 Antisense
TAAACTGTGGGCACTCTTGTTGCGG 354 637 566 Antisense
GTCGGGCAGATGACTTGGGCTGGGA 107 473 610 Antisense
Sequence Source Affymetrix Proprietary Database