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[186375_at]

Description F43C11.4 /REP_DB=WormBase Gene ID /WP=CE23720 /TR=Q9U5B7 /GB=AAF16615.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 23      4grp_total > 09      6grp_total_sub > Decrease      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 7.3
(-2.5)
A 		1.7
(-3)
A 		10
(-2.2)
A 		64.2
(3)
A 		63
B 3.9
(-3)
A 		7.7
(-1.7)
A 		6.1
(-2.2)
A 		21.3
(3)
A 		17
C 3.1
(-3)
A 		25.5
(-0.9)
A 		20.7
(-1.4)
A 		67.4
(3)
P 		64
avr 4.8
(-3) 		11.6
(-2.1) 		12.3
(-2) 		51
(3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 14.5
(-0)
A 		6.8
(-2)
A 		26.4
(3)
A 		2.9
(-3)
A 		7
(-2)
A 		6.8
(-2)
A 		24
B 16.9
(0.1)
A 		20
(0.8)
A 		30.4
(3)
A 		12.2
(-0.9)
A 		2.3
(-3)
A 		4.9
(-2.4)
A 		28
C 41.6
(3)
A 		31.3
(1.4)
A 		5.7
(-2.4)
A 		32.5
(1.6)
A 		1.9
(-3)
A 		16.2
(-0.8)
A 		40
avr 24.3
(3) 		19.4
(1.6) 		20.8
(2) 		15.9
(0.6) 		3.7
(-3) 		9.3
(-1.4) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 2.7
(-1.5)
A 		0.4
(-3)
A 		2.6
(-1.5)
A 		9.4
(3)
A 		9
B 1.2
(-3)
A 		1.9
(-1.7)
A 		1.4
(-2.6)
A 		4.5
(3)
A 		3
C 1
(-3)
A 		7.3
(0.6)
A 		7.2
(0.6)
A 		11.4
(3)
P 		10
avr 1.6
(-3) 		3.2
(-1.6) 		3.7
(-1.1) 		8.4
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 2.7
(-0.6)
A 		2.4
(-1)
A 		5.7
(3)
A 		0.7
(-3)
A 		2.1
(-1.3)
A 		1.7
(-1.8)
A 		5
B 5.9
(1.6)
A 		6.6
(2.3)
A 		7.4
(3)
A 		3.2
(-0.9)
A 		1
(-3)
A 		1.8
(-2.3)
A 		6
C 15.4
(3)
A 		9.5
(0.6)
A 		1.4
(-2.7)
A 		6.5
(-0.6)
A 		0.6
(-3)
A 		5.4
(-1.1)
A 		15
avr 8
(3) 		6.2
(1.4) 		4.8
(0.2) 		3.5
(-1) 		1.2
(-3) 		3
(-1.4) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186375_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4856
Sequence Type Exemplar sequence
Representative Public ID F43C11.4 NCBI
Target Description F43C11.4 /REP_DB=WormBase Gene ID /WP=CE23720 /TR=Q9U5B7 /GB=AAF16615.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061848(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061848 NCBI Caenorhabditis elegans F43C11.4 (F43C11.4) mRNA, complete cds. 11/11 None
F43C11.4 ENSEMBL cdna:known chromosome:CEL140:II:2347016:2350031:1 gene:F43C11.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000012996 7/11 Cross Hyb Matching Probes None
GENEFINDER00000013020 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2347014-2350030(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F43C11.4
Entrez Gene 185698 Entrez gene
SwissProt Q9U5B7 EMBL-EBI
WormBase CE23720 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF16615 Hypothetical protein F43C11.4 [Caenorhabditis elegans] ref|NP_494249.1| F43C11.4 [Caenorhabditis elegans] 1.0E-113
blast AAC26279 Hypothetical protein F16G10.11 [Caenorhabditis elegans] ref|NP_494265.1| F16G10.11 [Caenorhabditis elegans] 7.0E-35
blast AAA80368 Hypothetical protein F47B7.4 [Caenorhabditis elegans] ref|NP_508649.2| F47B7.4 [Caenorhabditis elegans] 7.0E-34
Protein Domains
Database ID Description E-Value
Pfam IPR003326 EMBL-EBI Protein of unknown function DUF130 1.0E-31
Sequence
Target Sequence 
>C. ELEGANS:186375_AT
gttatttctaattattccatgcttgattgcaaaaacagaatgttgcatgcgaatggttcc
gccagatgatgtatatattccgagcacattggctcctgaagaaagtacaaagagccctgg
agagatcacaatggctcccgaggaaagtacattggctccggaagatactacattgattgc
ctcagaggaaatttccagcacaacttccaatatggagactgatacgactgaggtattgct
ttataaattttcgaaaatttcaaaatttgtgagccaaatgatgactgttgaagagaacgg
ttgcactgagtttgtatgtcctgaagattttgttccaagggtagtttctactttcagtag
gagttctatagaaacacctcccggatttaccgattttacttcttttataattcaacctcc
agaaccatatgacgcaggaataaatacaattgattattttggaatcgtgtgtgacggaag
cttagcggtatcccagtatccacgtggaataatgcctttaggcggagatgtcattggcga
tga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTATTTCTAATTATTCCATGCTTG 692 447 27 Antisense
GATCACAATGGCTCCCGAGGAAAGT 160 419 150 Antisense
GAAGATACTACATTGATTGCCTCAG 590 337 187 Antisense
GGAAATTTCCAGCACAACTTCCAAT 257 527 213 Antisense
GTTGCACTGAGTTTGTATGTCCTGA 206 439 326 Antisense
AGTTCTATAGAAACACCTCCCGGAT 284 63 388 Antisense
ACTTCTTTTATAATTCAACCTCCAG 68 103 424 Antisense
CAACCTCCAGAACCATATGACGCAG 124 187 439 Antisense
GAAGCTTAGCGGTATCCCAGTATCC 555 341 503 Antisense
CACGTGGAATAATGCCTTTAGGCGG 552 199 527 Antisense
TAGGCGGAGATGTCATTGGCGATGA 178 655 545 Antisense
Sequence Source Affymetrix Proprietary Database