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[186374_at]

Description Y45F10B.5 /REP_DB=WormBase Gene ID /WP=CE18404 /TR=O62470 /GB=CAA16356.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 21      6grp_cgc > 52      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 44
(0.9)
A 		58.4
(3)
A 		17.8
(-3)
A 		43.7
(0.8)
A 		41
B 62.2
(3)
A 		19
(-3)
A 		49.1
(1.2)
A 		59.4
(2.6)
A 		43
C 44.1
(-0.6)
A 		51.5
(0.2)
A 		21.7
(-3)
A 		78
(3)
A 		56
avr 50.1
(1) 		43
(-0.4) 		29.5
(-3) 		60.4
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 21.7
(-3)
A 		38.2
(-0)
A 		55.1
(3)
A 		25.6
(-2.3)
A 		46.8
(1.5)
A 		39.2
(0.1)
A 		33
B 51.7
(1.7)
A 		63.7
(3)
A 		6.5
(-3)
A 		41.5
(0.7)
A 		41.1
(0.6)
A 		21.9
(-1.4)
A 		57
C 53.9
(-0)
A 		68.2
(3)
A 		52.2
(-0.4)
A 		43.7
(-2.2)
A 		44.8
(-2)
A 		39.9
(-3)
A 		28
avr 42.4
(-0.7) 		56.7
(3) 		37.9
(-1.9) 		36.9
(-2.2) 		44.2
(-0.3) 		33.7
(-3) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 16
(3)
A 		12.7
(1.3)
A 		4.6
(-3)
A 		6.4
(-2.1)
A 		11
B 19.8
(3)
A 		4.7
(-3)
A 		11.4
(-0.3)
A 		12.7
(0.2)
A 		15
C 14.6
(2.8)
A 		14.8
(3)
A 		7.5
(-3)
A 		13.2
(1.7)
A 		7
avr 16.8
(3) 		10.7
(-1.1) 		7.8
(-3) 		10.8
(-1) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 4
(-3)
A 		13.6
(2.7)
A 		12
(1.8)
A 		6.5
(-1.5)
A 		14.1
(3)
A 		9.5
(0.3)
A 		10
B 18
(2)
A 		21.2
(3)
A 		1.6
(-3)
A 		11
(-0.1)
A 		16.7
(1.6)
A 		8.2
(-1)
A 		20
C 20
(2.6)
A 		20.8
(3)
A 		13.3
(-0.8)
A 		8.8
(-3)
A 		14.5
(-0.2)
A 		13.4
(-0.7)
A 		12
avr 14
(0.2) 		18.5
(3) 		9
(-2.9) 		8.8
(-3) 		15.1
(0.9) 		10.4
(-2) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186374_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9121
Sequence Type Exemplar sequence
Representative Public ID Y45F10B.5 NCBI
Target Description Y45F10B.5 /REP_DB=WormBase Gene ID /WP=CE18404 /TR=O62470 /GB=CAA16356.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070216(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070216 NCBI Caenorhabditis elegans Serpentine Receptor, class U family member (sru-12) (sru-12) mRNA, complete cds. 9/11 None
Y45F10B.5 ENSEMBL cdna:known chromosome:CEL140:IV:13583148:13584448:1 gene:Y45F10B.5 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000007872 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13583153-13584454(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol sru-12
Ensembl Y45F10B.5
Entrez Gene 189916 Entrez gene
SwissProt O62470 EMBL-EBI
WormBase CE38240 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA16356 Hypothetical protein Y45F10B.5 [Caenorhabditis elegans] ref|NP_502617.2| Serpentine Receptor, class U family member (sru-12) [Caenorhabditis elegans] 1.0E-178
blast CAA98129 Hypothetical protein F53B2.4 [Caenorhabditis elegans] ref|NP_502397.2| Serpentine Receptor, class U family member (sru-13) [Caenorhabditis elegans] 1.0E-152
blast CAA16358 Hypothetical protein Y45F10B.6 [Caenorhabditis elegans] ref|NP_502618.2| Serpentine Receptor, class U family member (sru-11) [Caenorhabditis elegans] 1.0E-115
Protein Domains
Database ID Description E-Value
Pfam IPR003839 EMBL-EBI Protein of unknown function DUF215 1.5E-89
Pfam IPR003839 EMBL-EBI Protein of unknown function DUF215 1.5E-89
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502617.2 6 23-45,66-88,112-134,155-177,207-229,250-272
Y45F10B.5 6 40-62,83-105,129-151,172-194,224-246,267-289
Sequence
Target Sequence 
>C. ELEGANS:186374_AT
gtttgattccattatattacccgcagaaacataatgaagtttgcgccaaaacaattaaat
ttgcaattccattcatctacctctacccgtttatatttggattctccctgataccggcag
tcgggacatgtcgacaacttttgggtccttatcaatttggtgctatttttatttggtaca
cagggaattggtttgatataaaattaatgaatggttcaattttcaatttgatcctctggc
ttctcctatgcattatttcaaatttagccctttattttaaactgaaaaaactgaaaaatc
atcgaaaaagtgtgattctccaaagagcggagttatctctctcgcttactgcactttcca
tgcttttgtcatttgttacaaccctgatttgtgcacgtttccatgccaagattttccagt
taatatttataatatttccaacaatggcagtttattttattgcacttcggccatttggaa
atgactgtgaaatttgtttcggcccttggatcttctacttgacacatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTGATTCCATTATATTACCCGCA 676 451 467 Antisense
TCTACCTCTACCCGTTTATATTTGG 327 615 542 Antisense
TTATATTTGGATTCTCCCTGATACC 673 677 557 Antisense
GATACCGGCAGTCGGGACATGTCGA 337 425 576 Antisense
GGGTCCTTATCAATTTGGTGCTATT 513 497 609 Antisense
AGAGCGGAGTTATCTCTCTCGCTTA 100 71 790 Antisense
ACTGCACTTTCCATGCTTTTGTCAT 206 99 814 Antisense
GTTACAACCCTGATTTGTGCACGTT 330 445 841 Antisense
TGTGCACGTTTCCATGCCAAGATTT 43 555 856 Antisense
TGAAATTTGTTTCGGCCCTTGGATC 409 571 954 Antisense
CCTTGGATCTTCTACTTGACACATC 609 269 970 Antisense
Sequence Source Affymetrix Proprietary Database