[Home] | [Total List]

[186372_at]

Description F09E10.8 /REP_DB=WormBase Gene ID /WP=CE27939 /TR=Q19253 /GB=AAB52489.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 05      4grp_total > 14      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 10.7
(-1.2)
A 		4.2
(-2.7)
A 		2.9
(-3)
A 		28.9
(3)
A 		26
B 20.5
(3)
A 		11.7
(-1.2)
A 		8
(-3)
A 		10
(-2)
A 		13
C 2.7
(-2.5)
A 		3
(-2)
A 		6.7
(3)
A 		2.3
(-3)
A 		4
avr 11.3
(1.2) 		6.3
(-2.7) 		5.9
(-3) 		13.7
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 106
1 2 3 4 5 6 range
A 3.7
(-2.9)
A 		54
(3)
A 		2.8
(-3)
A 		27.8
(-0.1)
A 		20.1
(-1)
A 		13.3
(-1.8)
A 		51
B 15.1
(-0.8)
A 		11.1
(-1.8)
A 		31.1
(3)
A 		12.3
(-1.5)
A 		17.6
(-0.2)
A 		6
(-3)
A 		25
C 108.1
(3)
A 		11
(-2.5)
A 		4.7
(-2.9)
A 		14.4
(-2.3)
A 		21.3
(-1.9)
A 		2.2
(-3)
A 		106
avr 42.3
(3) 		25.4
(0.1) 		12.9
(-2) 		18.2
(-1.1) 		19.7
(-0.9) 		7.2
(-3) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 3.9
(2.5)
A 		0.9
(-2.7)
A 		0.7
(-3)
A 		4.2
(3)
A 		4
B 6.5
(3)
A 		2.9
(-1.6)
A 		1.8
(-3)
A 		2.1
(-2.6)
A 		5
C 0.9
(-1.4)
A 		0.9
(-1.4)
A 		2.3
(3)
A 		0.4
(-3)
A 		2
avr 3.8
(3) 		1.6
(-3) 		1.6
(-3) 		2.2
(-1.4) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 0.7
(-3)
A 		19.2
(3)
A 		0.6
(-3)
A 		7.1
(-0.9)
A 		6.1
(-1.2)
A 		3.2
(-2.2)
A 		19
B 5.2
(0.3)
A 		3.7
(-1.3)
A 		7.6
(3)
A 		3.3
(-1.8)
A 		7.2
(2.6)
A 		2.2
(-3)
A 		5
C 40.1
(3)
A 		3.4
(-2.6)
A 		1.2
(-2.9)
A 		2.9
(-2.7)
A 		6.9
(-2.1)
A 		0.7
(-3)
A 		39
avr 15.3
(3) 		8.8
(0.1) 		3.1
(-2.5) 		4.4
(-1.9) 		6.7
(-0.9) 		2
(-3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186372_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18127
Sequence Type Exemplar sequence
Representative Public ID F09E10.8 NCBI
Target Description F09E10.8 /REP_DB=WormBase Gene ID /WP=CE27939 /TR=Q19253 /GB=AAB52489.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171630(11), NM_171940(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171630 NCBI Caenorhabditis elegans F09E10.8b (F09E10.8) mRNA, complete cds. 11/11 None
NM_171940 NCBI Caenorhabditis elegans F09E10.8a (F09E10.8) mRNA, complete cds. 11/11 None
SNAP00000026367 ENSEMBL cdna:SNAP chromosome:CEL140:X:1509730:1513330:-1 9/11 None
GENEFINDER00000026372 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1510962:1515848:-1 10/11 None
F09E10.8a ENSEMBL cdna:known chromosome:CEL140:X:1510513:1521389:-1 gene:F09E10.8 11/11 None
F09E10.8b.2 ENSEMBL cdna:known chromosome:CEL140:X:1510547:1521904:-1 gene:F09E10.8 11/11 None
F09E10.8b.1 ENSEMBL cdna:known chromosome:CEL140:X:1510547:1521482:-1 gene:F09E10.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1511062-1514938(-) 100.0 100.0
Public Domain and Genome References
Ensembl F09E10.8
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM54198 Hypothetical protein F09E10.8b [Caenorhabditis elegans] ref|NP_741722.1| F09E10.8b [Caenorhabditis elegans] 0.0
blast AAB52489 Hypothetical protein F09E10.8a [Caenorhabditis elegans] ref|NP_741723.1| F09E10.8a [Caenorhabditis elegans] 0.0
blast CAE70012 Hypothetical protein CBG16426 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001452 EMBL-EBI SH3 3.4E-10
Pfam IPR001060 EMBL-EBI Cdc15/Fes/CIP4 1.5E-11
Pfam IPR001452 EMBL-EBI SH3 3.4E-10
Pfam IPR001452 EMBL-EBI SH3 1.4E-4
Pfam IPR001452 EMBL-EBI SH3 1.4E-4
Pfam IPR001060 EMBL-EBI Cdc15/Fes/CIP4 3.6E-9
Sequence
Target Sequence 
>C. ELEGANS:186372_AT
gagtcgcgagggtgtcagcaagatgcaggctgcctaccgggaaaacccgaagctcggcaa
tccgagcgactgtgacgctcagctggcacaatatggacatgagattgacgcgttgagcaa
tcaaattcaaaagtttaagattctgctggacgatgtgaatgctcagttgggagctggtgg
attgtctgcgacgagcgttggcgggagtgacacgccgccatcgattcggtcggtttcgtc
ggcgtcgtcgggcgttacgtcgagagtgaacacgatcaatgatgcgcacaggactaatgg
aggggtgggcggaggtcgtcgggaaagtttctccggaagtaatggcggtagtgacacgga
tccgacaataaacgggaatggacatggacgtgatgagctctacgaagaatgctccaatcc
taacccggtgctcggtgaagcaattgctcaattcgcatttgacggagctcaagatggaac
gattcgcatggaggcgaacgagaagctgtggctgattgagaaggacgaaggcgatggatg
gacccgtgtgagaaaagaaaacaactcggcggatggtttcgtgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTCGCGAGGGTGTCAGCAAGATG 43 401 1053 Antisense
CAGCAAGATGCAGGCTGCCTACCGG 250 205 1068 Antisense
TCGGCAATCCGAGCGACTGTGACGC 407 605 1106 Antisense
ACTGTGACGCTCAGCTGGCACAATA 396 97 1121 Antisense
TGGATTGTCTGCGACGAGCGTTGGC 318 549 1230 Antisense
AGCGTTGGCGGGAGTGACACGCCGC 425 81 1246 Antisense
TCGTCGGGCGTTACGTCGAGAGTGA 127 601 1297 Antisense
GGCGGTAGTGACACGGATCCGACAA 26 535 1396 Antisense
CTAACCCGGTGCTCGGTGAAGCAAT 527 147 1472 Antisense
GAAGGCGATGGATGGACCCGTGTGA 207 333 1579 Antisense
AACAACTCGGCGGATGGTTTCGTGC 464 135 1612 Antisense
Sequence Source Affymetrix Proprietary Database