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[186371_at]

Description Y43F11A.3 /REP_DB=WormBase Gene ID /WP=CE24282 /TR=Q9U2G7 /GB=CAB55040.2 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 19      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 8.3
(-2.2)
A 		0.7
(-3)
A 		1.1
(-3)
A 		60.4
(3)
A 		60
B 22.1
(-0.6)
A 		45.3
(3)
A 		6.1
(-3)
A 		15.9
(-1.5)
A 		39
C 23.3
(-1.7)
A 		19.1
(-3)
A 		19.4
(-2.9)
A 		38.7
(3)
M 		20
avr 17.9
(-1.2) 		21.7
(-0.4) 		8.9
(-3) 		38.3
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 8.3
(-1.8)
A 		0.7
(-3)
A 		23.5
(0.7)
A 		1.2
(-2.9)
A 		22
(0.4)
A 		37.9
(3)
A 		37
B 11.1
(-2.3)
A 		8.9
(-2.6)
A 		5.9
(-3)
A 		13.8
(-1.9)
A 		17.5
(-1.4)
A 		50.2
(3)
P 		44
C 6.7
(-2.2)
A 		18.5
(-0.2)
A 		27
(1.2)
A 		1.7
(-3)
A 		37.8
(3)
A 		29.7
(1.7)
P 		36
avr 8.7
(-2.4) 		9.4
(-2.3) 		18.8
(-0.6) 		5.6
(-3) 		25.8
(0.6) 		39.3
(3) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 3
(-1)
A 		0.2
(-3)
A 		0.3
(-2.9)
A 		8.8
(3)
A 		9
B 7
(0.4)
A 		11.2
(3)
A 		1.4
(-3)
A 		3.4
(-1.8)
A 		10
C 7.7
(3)
A 		5.5
(-3)
A 		6.8
(0.5)
A 		6.5
(-0.3)
M 		2
avr 5.9
(2.5) 		5.6
(1.9) 		2.8
(-3) 		6.2
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 1.5
(-2.1)
A 		0.2
(-3)
A 		5.1
(0.3)
A 		0.3
(-2.9)
A 		6.6
(1.3)
A 		9.2
(3)
A 		9
B 3.8
(-2.2)
A 		3
(-2.4)
A 		1.4
(-3)
A 		3.7
(-2.2)
A 		7.1
(-1)
A 		18.7
(3)
P 		17
C 2.5
(-1.9)
A 		5.7
(-0.3)
A 		6.9
(0.3)
A 		0.4
(-3)
A 		12.2
(3)
A 		9.9
(1.8)
P 		12
avr 2.6
(-2.4) 		3
(-2.2) 		4.5
(-1.4) 		1.5
(-3) 		8.6
(0.8) 		12.6
(3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186371_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3796
Sequence Type Exemplar sequence
Representative Public ID Y43F11A.3 NCBI
Target Description Y43F11A.3 /REP_DB=WormBase Gene ID /WP=CE24282 /TR=Q9U2G7 /GB=CAB55040.2 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064176
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000033633 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12116801:12118377:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_064176 7/11 Cross Hyb Matching Probes None
SNAP00000033621 6/11 Cross Hyb Matching Probes None
Y43F11A.3 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12116851-12118427(-) 63.3 100.0
Sequence
Target Sequence 
>C. ELEGANS:186371_AT
aagtgctgttgtagaagtcgacgacagtaaccgaatcacaaaataccaagcattcgatga
aaatggactgaaaatctcgacgagatatacgaaaattccggaatttaagcgagcattcct
cagaagaagtgattatggaacgggaaaagtcgatggtccgatgaaaaggtgctcggcgag
cattttttttggaaaatatagcattacaattttcggaaaaatttggaatggaattaggaa
attctttttaaaaaatcgtttggccggtaaacgatttttccagcaaatcggcaaattgcc
ggaattgaaaattttcggcaaattgtggtttcggactttttttttggaaatttcagaatt
tcaatttcaaattgcaaaattaaacgcatcctatgaattttcttacatctattttgaaaa
accctgcctcgaggatttcaacgcttcaagctcttccagctcttcagttttggctccgcc
acgtgtcgatgagcacgttgaatgggaattgatgtcttcgatgcaccatgaagctgatga
gatttgtgatatttcgaggttttgggttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTGCTGTTGTAGAAGTCGACGAC 631 157 189 Antisense
AGTCGACGACAGTAACCGAATCACA 272 61 204 Antisense
ATTTAAGCGAGCATTCCTCAGAAGA 268 15 291 Antisense
GCTCGGCGAGCATTTTTTTTGGAAA 585 299 359 Antisense
TGGCCGGTAAACGATTTTTCCAGCA 383 541 449 Antisense
TTCGGCAAATTGTGGTTTCGGACTT 48 643 502 Antisense
CTATTTTGAAAAACCCTGCCTCGAG 421 221 597 Antisense
TGCCTCGAGGATTTCAACGCTTCAA 408 585 613 Antisense
ATTTCAACGCTTCAAGCTCTTCCAG 462 13 623 Antisense
GGAATTGATGTCTTCGATGCACCAT 526 533 693 Antisense
TGTGATATTTCGAGGTTTTGGGTTG 119 549 733 Antisense
Sequence Source Affymetrix Proprietary Database