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[186370_at]

Description Y111B2A.5 /REP_DB=WormBase Gene ID /WP=CE23264 /TR=Q9NEM3 /GB=CAB81956.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 45      4grp_total > 03      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 14.6
(0)
A 		1.6
(-3)
A 		1.6
(-3)
A 		27.6
(3)
A 		26
B 3.1
(-2.6)
A 		5.5
(-2.1)
A 		0.9
(-3)
A 		32.1
(3)
A 		31
C 3.2
(-2.8)
A 		5.6
(-2.5)
A 		2.2
(-3)
A 		40.9
(3)
A 		39
avr 7
(-2) 		4.2
(-2.5) 		1.6
(-3) 		33.5
(3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 53.1
(3)
A 		29.3
(0.2)
A 		30.9
(0.4)
A 		4.8
(-2.7)
A 		2.1
(-3)
A 		36.1
(1)
A 		51
B 16.8
(0.2)
A 		1.1
(-3)
A 		30.2
(3)
A 		4.4
(-2.3)
A 		2
(-2.8)
A 		29.6
(2.9)
A 		29
C 13.3
(-0.2)
A 		3.9
(-3)
A 		24.1
(3)
A 		6.6
(-2.2)
A 		4
(-3)
A 		5.5
(-2.5)
A 		20
avr 27.7
(2.8) 		11.4
(-1) 		28.4
(3) 		5.3
(-2.4) 		2.7
(-3) 		23.7
(1.9) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 5.3
(3)
A 		0.3
(-3)
A 		0.4
(-2.9)
A 		4
(1.4)
A 		5
B 1
(-2.3)
A 		1.4
(-1.9)
A 		0.2
(-3)
A 		6.8
(3)
A 		7
C 1.1
(-2.7)
A 		1.6
(-2.2)
A 		0.8
(-3)
A 		6.9
(3)
A 		6
avr 2.5
(-0.8) 		1.1
(-2.3) 		0.5
(-3) 		5.9
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 9.8
(2.6)
A 		10.4
(3)
A 		6.7
(0.7)
A 		1.2
(-2.6)
A 		0.6
(-3)
A 		8.8
(2)
A 		10
B 5.8
(0.1)
A 		0.4
(-3)
A 		7.3
(0.9)
A 		1.2
(-2.5)
A 		0.8
(-2.8)
A 		11
(3)
A 		11
C 4.9
(1.5)
A 		1.2
(-3)
A 		6.1
(3)
A 		1.3
(-2.9)
A 		1.3
(-2.9)
A 		1.8
(-2.3)
A 		5
avr 6.8
(2.6) 		4
(-0) 		6.7
(2.5) 		1.2
(-2.7) 		0.9
(-3) 		7.2
(3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186370_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7253
Sequence Type Exemplar sequence
Representative Public ID Y111B2A.5 NCBI
Target Description Y111B2A.5 /REP_DB=WormBase Gene ID /WP=CE23264 /TR=Q9NEM3 /GB=CAB81956.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NR_002374(11), NM_001027650(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NR_002374 NCBI Caenorhabditis elegans Y111B2A.5, miscRNA. 11/11 None
NM_001027650 NCBI Caenorhabditis elegans Y111B2A.5a (Y111B2A.5) mRNA, complete cds. 11/11 None
SNAP00000006147 ENSEMBL cdna:SNAP chromosome:CEL140:III:12516763:12527093:1 11/11 None
GENEFINDER00000006293 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12516763:12517203:1 11/11 None
Y111B2A.5a ENSEMBL cdna:known chromosome:CEL140:III:12509792:12517203:1 gene:Y111B2A.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12516758-12517199(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y111B2A.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB81956 Hypothetical protein Y111B2A.5a [Caenorhabditis elegans] ref|NP_001022821.1| Y111B2A.5a [Caenorhabditis elegans] 0.0
blast CAD91707 Hypothetical protein Y111B2A.26 [Caenorhabditis elegans] ref|NP_001022818.1| Y111B2A.26 [Caenorhabditis elegans] 1.0E-146
blast CAB81956 Hypothetical protein Y111B2A.5a [Caenorhabditis elegans] ref|NP_001022821.1| Y111B2A.5a [Caenorhabditis elegans] 4.0E-40
blast CAB81956 Hypothetical protein Y111B2A.5a [Caenorhabditis elegans] ref|NP_001022821.1| Y111B2A.5a [Caenorhabditis elegans] 2.0E-27
blast XP_421324 PREDICTED: similar to thyroid hormone receptor interactor 11; thyroid receptor interacting protein 11 [Gallus gallus] 4.0E-22
blast BAA08111.1 embryonic muscle myosin heavy chain [Halocynthia roretzi] 6.0E-9
Sequence
Target Sequence 
>C. ELEGANS:186370_AT
ggaagatcagctcgaagcgaaggttaaagcattgaaagaagctaaagaagaatcatcaaa
actcgagaaaaagcttgaaaaagcggaaaaagagcggattgcattagaagttttggaaga
gcagaacagatttttgaatgaaaaattggaaaaattgatggaaaaagaaaattctgacca
aactggtgcttctcaagctacagcagaacttcaaaattcttcaatttctcaattaacgga
gcaactggaaagtgtgaaggctgagaatgctcgcttggcgtcggaaattgaaaaatctgg
attatcagagaattctgatgagctcagagctctccagctcgaaaatgagca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAAGATCAGCTCGAAGCGAAGGTT 325 531 15 Antisense
GAGCGGATTGCATTAGAAGTTTTGG 18 387 106 Antisense
AATTCTGACCAAACTGGTGCTTCTC 526 177 184 Antisense
GGTGCTTCTCAAGCTACAGCAGAAC 380 501 199 Antisense
GAACTTCAAAATTCTTCAATTTCTC 17 349 220 Antisense
TCAATTTCTCAATTAACGGAGCAAC 283 633 235 Antisense
GCAACTGGAAAGTGTGAAGGCTGAG 74 313 255 Antisense
GAAGGCTGAGAATGCTCGCTTGGCG 536 333 270 Antisense
GAATGCTCGCTTGGCGTCGGAAATT 588 329 279 Antisense
AGAGAATTCTGATGAGCTCAGAGCT 351 69 321 Antisense
GAGCTCTCCAGCTCGAAAATGAGCA 572 387 341 Antisense
Sequence Source Affymetrix Proprietary Database