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[186369_at]

Description C33E10.6 /REP_DB=WormBase Gene ID /WP=CE23567 /TR=Q9N504 /GB=AAF60546.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 46      4grp_total > 03      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 1.7
(-3)
A 		4.2
(-2.5)
A 		1.8
(-3)
A 		33.6
(3)
A 		32
B 8.9
(3)
A 		3.7
(-1.6)
A 		2.1
(-3)
A 		8.2
(2.4)
A 		7
C 1.9
(-2.7)
A 		1.9
(-2.7)
A 		1.1
(-3)
A 		15.9
(3)
A 		15
avr 4.2
(-2.1) 		3.3
(-2.5) 		1.7
(-3) 		19.2
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 1.9
(-0.8)
A 		1.5
(-1.5)
A 		0.7
(-3)
A 		4
(3)
A 		2.2
(-0.3)
A 		1.5
(-1.5)
A 		3
B 1.3
(-2.7)
A 		10.9
(3)
A 		2.8
(-1.8)
A 		0.8
(-3)
A 		1.4
(-2.6)
A 		1.1
(-2.8)
A 		10
C 6.6
(0.7)
A 		1.3
(-3)
A 		2.6
(-2.1)
A 		1.8
(-2.7)
A 		1.4
(-2.9)
A 		9.9
(3)
A 		9
avr 3.3
(0.3) 		4.6
(3) 		2
(-2.4) 		2.2
(-2) 		1.7
(-3) 		4.2
(2.2) 		3
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 0.6
(-2.9)
A 		0.9
(-2.5)
A 		0.5
(-3)
A 		4.9
(3)
A 		4
B 2.9
(3)
A 		0.9
(-2)
A 		0.5
(-3)
A 		1.8
(0.3)
A 		2
C 0.6
(-2.5)
A 		0.6
(-2.5)
A 		0.4
(-3)
A 		2.7
(3)
A 		2
avr 1.4
(-0.9) 		0.8
(-2.3) 		0.5
(-3) 		3.1
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 0.4
(-1.5)
A 		0.5
(-0.8)
A 		0.2
(-3)
A 		1
(3)
A 		0.7
(0.8)
A 		0.4
(-1.5)
A 		1
B 0.5
(-2.5)
A 		3.6
(3)
A 		0.7
(-2.1)
A 		0.2
(-3)
A 		0.6
(-2.3)
A 		0.4
(-2.6)
A 		3
C 2.4
(1.1)
A 		0.4
(-3)
A 		0.7
(-2.4)
A 		0.4
(-3)
A 		0.5
(-2.8)
A 		3.3
(3)
A 		3
avr 1.1
(0.6) 		1.5
(3) 		0.5
(-3) 		0.5
(-3) 		0.6
(-2.4) 		1.4
(2.4) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186369_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17379
Sequence Type Exemplar sequence
Representative Public ID C33E10.6 NCBI
Target Description C33E10.6 /REP_DB=WormBase Gene ID /WP=CE23567 /TR=Q9N504 /GB=AAF60546.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078402(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078402 NCBI Caenorhabditis elegans C33E10.6 (C33E10.6) mRNA, complete cds. 11/11 None
GENEFINDER00000003545 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:17266606:17269871:1 9/11 None
C33E10.6 ENSEMBL cdna:known chromosome:CEL140:X:17266606:17269871:1 gene:C33E10.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17266605-17269871(+) 97.8 100.0
Public Domain and Genome References
Gene Title
Ensembl C33E10.6
Entrez Gene 183163 Entrez gene
SwissProt Q9N504 EMBL-EBI
WormBase CE23567 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK84500 Hypothetical protein C33E10.6 [Caenorhabditis elegans] ref|NP_510803.1| C33E10.6 [Caenorhabditis elegans] 0.0
blast CAE69662 Hypothetical protein CBG15910 [Caenorhabditis briggsae] 0.0
blast CAE56350 Hypothetical protein CBG24022 [Caenorhabditis briggsae] 0.0
blast CAE69070 Hypothetical protein CBG15088 [Caenorhabditis briggsae] 1.0E-115
blast CAA22056 Hypothetical protein Y106G6G.5 [Caenorhabditis elegans] ref|NP_492704.1| Y106G6G.5 [Caenorhabditis elegans] 1.0E-110
Sequence
Target Sequence 
>C. ELEGANS:186369_AT
aaagcctaactttaagaatagcactattatagtagataatctattaagtgttgaaatgag
taaaatctctatagtttttgataagccgatatatgttgctcttagcatattagatcttag
taaaactatcatgtatgaatttcactatgatgtgatgaaaaaacattttggaaataaaat
tgatttatgctatcaagatacagactcatttatctatgaggtgaagactgatgatattta
tgaagatatgggtaatatgaaagagcattttgacttcagtgattatcctaagaatcaccc
gttatatgatgaaagtaataagaaaaaatcggcaaattcaaggatgagcttaattctaaa
attatggatgaaggaaaagtctaaaggtctgaagaagaatgttactaatacattaactat
agaagacttcaagcgctgtctattccagaatgaaattataagaaagacacaatatatgat
ccgagcaaagaagcataaaatatataccattaaacaaaataaggtcgctttgaatgagga
tga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGCCTAACTTTAAGAATAGCACT 133 125 2430 Antisense
ATCTCTATAGTTTTTGATAAGCCGA 643 31 2494 Antisense
GATAAGCCGATATATGTTGCTCTTA 313 421 2509 Antisense
GTTGCTCTTAGCATATTAGATCTTA 414 439 2524 Antisense
GCTATCAAGATACAGACTCATTTAT 585 303 2618 Antisense
GCATTTTGACTTCAGTGATTATCCT 289 307 2694 Antisense
GATTATCCTAAGAATCACCCGTTAT 689 427 2710 Antisense
GAAGACTTCAAGCGCTGTCTATTCC 694 339 2851 Antisense
CAAGCGCTGTCTATTCCAGAATGAA 185 187 2859 Antisense
GAAAGACACAATATATGATCCGAGC 385 359 2891 Antisense
ATAAGGTCGCTTTGAATGAGGATGA 209 25 2948 Antisense
Sequence Source Affymetrix Proprietary Database