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[186368_at]

Description Y39A1A.16 /REP_DB=WormBase Gene ID /WP=CE19136 /TR=Q9XX13 /GB=CAA21028.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 59      4grp_total > 04      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 87
1 2 3 4 range
A 45.2
(0.9)
A 		9.4
(-3)
A 		14.7
(-2.4)
A 		65
(3)
A 		56
B 9.7
(0.3)
A 		9.1
(-0)
A 		3.2
(-3)
A 		15
(3)
A 		12
C 6.9
(-3)
A 		12.9
(-2.6)
A 		6.7
(-3)
A 		90.3
(3)
P 		84
avr 20.6
(-1.5) 		10.5
(-2.7) 		8.2
(-3) 		56.8
(3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 16
(1.7)
A 		7
(-1.7)
A 		3.9
(-2.9)
A 		3.6
(-3)
A 		19.6
(3)
A 		16.6
(1.9)
A 		16
B 24.3
(1.3)
A 		6
(-3)
A 		7.2
(-2.7)
A 		31.7
(3)
A 		19.1
(0.1)
A 		24.8
(1.4)
A 		26
C 2.9
(-3)
A 		5.4
(-1.5)
A 		7.9
(0.1)
A 		7.2
(-0.4)
A 		3.5
(-2.6)
A 		12.7
(3)
A 		10
avr 14.4
(1.2) 		6.1
(-3) 		6.3
(-2.9) 		14.2
(1.1) 		14.1
(1) 		18
(3) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 16.4
(3)
A 		2
(-3)
A 		3.8
(-2.3)
A 		9.5
(0.1)
A 		14
B 3.1
(2.8)
A 		2.2
(0.6)
A 		0.7
(-3)
A 		3.2
(3)
A 		3
C 2.3
(-3)
A 		3.7
(-2.3)
A 		2.3
(-3)
A 		15.2
(3)
P 		13
avr 7.3
(1.3) 		2.6
(-2.7) 		2.3
(-3) 		9.3
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 2.9
(-0.6)
A 		2.5
(-1.1)
A 		0.9
(-3)
A 		0.9
(-3)
A 		5.9
(3)
A 		4
(0.7)
A 		5
B 8.5
(2.4)
A 		2
(-2.8)
A 		1.7
(-3)
A 		8.4
(2.4)
A 		7.8
(1.9)
A 		9.2
(3)
A 		8
C 1.1
(-3)
A 		1.6
(-2)
A 		2
(-1.3)
A 		1.5
(-2.2)
A 		1.1
(-3)
A 		4.2
(3)
A 		3
avr 4.2
(0.8) 		2
(-2.3) 		1.5
(-3) 		3.6
(-0.1) 		4.9
(1.7) 		5.8
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186368_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6234
Sequence Type Exemplar sequence
Representative Public ID Y39A1A.16 NCBI
Target Description Y39A1A.16 /REP_DB=WormBase Gene ID /WP=CE19136 /TR=Q9XX13 /GB=CAA21028.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066952(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066952 NCBI Caenorhabditis elegans Y39A1A.16 (Y39A1A.16) mRNA, complete cds. 11/11 None
Y39A1A.16 ENSEMBL cdna:known chromosome:CEL140:III:10679351:10682089:1 gene:Y39A1A.16 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10679346-10682085(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y39A1A.16
Entrez Gene 189710 Entrez gene
SwissProt Q9XX13 EMBL-EBI
WormBase CE19136 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21028 Hypothetical protein Y39A1A.16 [Caenorhabditis elegans] ref|NP_499353.1| Y39A1A.16 [Caenorhabditis elegans] 0.0
blast CAB04160 Hypothetical protein F21D9.1 [Caenorhabditis elegans] ref|NP_507748.1| F21D9.1 [Caenorhabditis elegans] 1.0E-106
blast AAF39964 Hypothetical protein T02H6.5 [Caenorhabditis elegans] ref|NP_493792.1| T02H6.5 [Caenorhabditis elegans] 8.0E-92
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.1E-8
Sequence
Target Sequence 
>C. ELEGANS:186368_AT
gagagattccaatatctcgaccgaagaaatgcaatttctattgaacaagatcaatgtcaa
ctatggaatgctagttcgatgtgaattattgggaagtatgaataatgaagctatgttaaa
aattcctcgcttggatatattcaccgcagaatatataaccctgaaagacttggtgaacat
ggattgtgaagtcattaaattatggagacatctattcacatcacagcatatcaatcaatt
tattcatcattggatggcaggagcggtgccgaaattaagaaaacttcgtttgaattattt
ctgtgagcctagttgggtcgatgagattttgcttggcgttaaacattcgaaatgggacag
aagacgccgaccgcaatttttttgtgatggattggaacgggttgattgtgcagatggaga
tgatattgaacgagatgatggattacatgctactgtaatttttatgcacgacgctattaa
ctttcttgta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAGATTCCAATATCTCGACCGAA 480 393 609 Antisense
GCTATGTTAAAAATTCCTCGCTTGG 505 301 718 Antisense
AATTCCTCGCTTGGATATATTCACC 31 179 729 Antisense
GAGACATCTATTCACATCACAGCAT 322 393 813 Antisense
GGATGGCAGGAGCGGTGCCGAAATT 376 515 860 Antisense
ATTTCTGTGAGCCTAGTTGGGTCGA 76 17 905 Antisense
GGGTCGATGAGATTTTGCTTGGCGT 677 497 923 Antisense
AAATGGGACAGAAGACGCCGACCGC 555 119 958 Antisense
ACGCCGACCGCAATTTTTTTGTGAT 466 91 972 Antisense
GCTACTGTAATTTTTATGCACGACG 320 303 1057 Antisense
GCACGACGCTATTAACTTTCTTGTA 137 315 1074 Antisense
Sequence Source Affymetrix Proprietary Database