[Home] | [Total List]

[186367_at]

Description C02B10.5 /REP_DB=WormBase Gene ID /WP=CE16802 /TR=O44447 /GB=AAB92020.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 80      6grp_high1_10_10 > 19      4grp_highest_8_8 > 57      4grp_high_8_8 > 34      6grp_highest_nonorm > 75      6grp_total > 29      4grp_total > 45      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 405
1 2 3 4 range
A 1169.2
(3)
P 		1068.5
(1.1)
P 		844.6
(-3)
P 		927
(-1.5)
P 		325
B 984.5
(3)
P 		867.1
(-1.1)
P 		837.8
(-2.1)
P 		813.2
(-3)
P 		171
C 1112.6
(3)
P 		951.6
(0.2)
P 		843.4
(-1.6)
P 		764.2
(-3)
P 		348
avr 1088.8
(3) 		962.4
(0) 		841.9
(-2.8) 		834.8
(-3) 		254

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 608
1 2 3 4 5 6 range
A 1050
(3)
P 		846.7
(0.8)
P 		502.4
(-3)
P 		635.4
(-1.5)
P 		900.2
(1.4)
P 		826.8
(0.6)
P 		548
B 1110.3
(3)
P 		882.5
(-0.7)
P 		916.9
(-0.2)
P 		742.9
(-3)
P 		844.7
(-1.3)
P 		862.2
(-1.1)
P 		367
C 1022.2
(3)
P 		913
(1.3)
P 		847.3
(0.3)
P 		877.7
(0.8)
P 		1009.9
(2.8)
P 		626.3
(-3)
P 		396
avr 1060.8
(3) 		880.7
(-0.5) 		755.5
(-2.9) 		752
(-3) 		918.3
(0.2) 		771.8
(-2.6) 		309
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 297
1 2 3 4 range
A 425.7
(3)
P 		231.9
(-1)
P 		220.8
(-1.2)
P 		135.7
(-3)
P 		290
B 313.9
(3)
P 		214.2
(-1.3)
P 		194.1
(-2.1)
P 		173.3
(-3)
P 		141
C 368.3
(3)
P 		273.6
(0.6)
P 		294
(1.1)
P 		128.9
(-3)
P 		239
avr 369.3
(3) 		239.9
(-0.5) 		236.3
(-0.6) 		146
(-3) 		223

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 277
1 2 3 4 5 6 range
A 193.6
(-0.4)
P 		301.1
(3)
P 		109.4
(-3)
P 		161.1
(-1.4)
P 		271.6
(2.1)
P 		201.3
(-0.1)
P 		192
B 386.3
(3)
P 		293.7
(0.1)
P 		222.6
(-2.2)
P 		196.8
(-3)
P 		343.2
(1.6)
P 		321.5
(0.9)
P 		190
C 378.9
(3)
P 		278.6
(0)
P 		215.6
(-1.8)
P 		176.5
(-3)
P 		326.8
(1.5)
P 		209.7
(-2)
P 		202
avr 319.6
(3) 		291.1
(1.8) 		182.5
(-2.8) 		178.1
(-3) 		313.9
(2.8) 		244.2
(-0.2) 		142
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186367_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10703
Sequence Type Exemplar sequence
Representative Public ID C02B10.5 NCBI
Target Description C02B10.5 /REP_DB=WormBase Gene ID /WP=CE16802 /TR=O44447 /GB=AAB92020.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068318(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068318 NCBI Caenorhabditis elegans C02B10.5 (C02B10.5) mRNA, complete cds. 11/11 None
SNAP00000004588 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5083537:5086421:1 11/11 None
GENEFINDER00000004597 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5083537:5086421:1 11/11 None
C02B10.5.3 ENSEMBL cdna:known chromosome:CEL140:IV:5083291:5086877:1 gene:C02B10.5 11/11 None
C02B10.5.1 ENSEMBL cdna:known chromosome:CEL140:IV:5083293:5086877:1 gene:C02B10.5 11/11 A 
C02B10.5.2 ENSEMBL cdna:known chromosome:CEL140:IV:5083320:5086877:1 gene:C02B10.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5083542-5086427(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C02B10.5
Entrez Gene 177280 Entrez gene
SwissProt O44447 EMBL-EBI
WormBase CE16802 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB92020 Hypothetical protein C02B10.5 [Caenorhabditis elegans] ref|NP_500719.1| C02B10.5 [Caenorhabditis elegans] 1.0E-172
blast CAE72736 Hypothetical protein CBG19977 [Caenorhabditis briggsae] 5.0E-79
Sequence
Target Sequence 
>C. ELEGANS:186367_AT
aatgctcaaaaagctgccgctgctgcagcagccgccggaatgtctcctgcagctcgggcg
tcaccaatgggtgcctcaccgtctccccatcatcctcatccttcccaattcccaccgaat
catccggccaatccaatgtatcaccaccacataatgatgatgagagcaatgcatgcacaa
ggtgggcagccaggacatccaggaatgatgccaccagggatgatgccgcccggaatgatg
ccgcccggaatgatgccacctggcatgcatccaggtatggccggtatgccaccaatgcat
ccaggaatgcagggaatgccgccgatgcatccgggaatgcaaggaatgcccgggatgcca
cacggacctccgcaacctccgcaaaatcccgctctcatggttgccggaaatcgagctggc
tccgcagaagctgcagctgctcaaatgggcaatccacatcatccgatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGCTCAAAAAGCTGCCGCTGCTG 112 167 1549 Antisense
GAATCATCCGGCCAATCCAATGTAT 547 327 1665 Antisense
ATGATGCCACCAGGGATGATGCCGC 267 45 1753 Antisense
GGATGATGCCGCCCGGAATGATGCC 290 513 1766 Antisense
GAATGATGCCGCCCGGAATGATGCC 692 331 1781 Antisense
TGGCATGCATCCAGGTATGGCCGGT 457 543 1809 Antisense
GGAATGCAGGGAATGCCGCCGATGC 357 531 1852 Antisense
TGCAAGGAATGCCCGGGATGCCACA 336 577 1886 Antisense
CGCTCTCATGGTTGCCGGAAATCGA 644 245 1938 Antisense
GAAATCGAGCTGGCTCCGCAGAAGC 574 361 1955 Antisense
AATGGGCAATCCACATCATCCGATG 515 163 1992 Antisense
Sequence Source Affymetrix Proprietary Database