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[186366_at]

Description F26A1.13 /REP_DB=WormBase Gene ID /WP=CE02681 /TR=Q19803 /GB=AAA68255.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 05      4grp_total > 02      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 8.3
(-2.5)
A 		1.8
(-3)
A 		2.1
(-3)
A 		85.3
(3)
A 		84
B 12.8
(-2.2)
A 		9.6
(-3)
A 		21.3
(-0.2)
A 		34.7
(3)
A 		25
C 8.6
(-2.4)
A 		4.4
(-3)
A 		4.9
(-2.9)
A 		46.7
(3)
A 		42
avr 9.9
(-2.5) 		5.3
(-3) 		9.4
(-2.5) 		55.6
(3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 8.2
(-0.2)
A 		6.2
(-1.1)
A 		4.9
(-1.7)
A 		3.7
(-2.2)
A 		15.2
(3)
A 		2
(-3)
A 		13
B 7.5
(0.3)
A 		7.3
(0.2)
A 		12.7
(3)
A 		5.4
(-0.8)
A 		1.3
(-3)
A 		2.3
(-2.5)
A 		11
C 22.4
(3)
A 		14.8
(0.9)
A 		3.1
(-2.4)
A 		4.6
(-1.9)
A 		1.3
(-2.9)
A 		0.8
(-3)
A 		22
avr 12.7
(3) 		9.4
(1.2) 		6.9
(-0.2) 		4.6
(-1.4) 		5.9
(-0.7) 		1.7
(-3) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 3
(-1.7)
A 		0.4
(-3)
A 		0.5
(-3)
A 		12.5
(3)
A 		12
B 4.1
(-1)
A 		2.4
(-3)
A 		4.9
(0)
A 		7.4
(3)
A 		5
C 2.8
(-1.6)
A 		1.3
(-3)
A 		1.7
(-2.6)
A 		7.9
(3)
A 		7
avr 3.3
(-1.6) 		1.4
(-3) 		2.4
(-2.2) 		9.3
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 1.5
(-1.5)
A 		2.2
(-0.5)
A 		1.1
(-2.1)
A 		0.9
(-2.4)
A 		4.6
(3)
A 		0.5
(-3)
A 		4
B 2.6
(1.8)
A 		2.4
(1.4)
A 		3.1
(3)
A 		1.4
(-0.9)
A 		0.5
(-3)
A 		0.8
(-2.3)
A 		3
C 8.3
(3)
A 		4.5
(0.2)
A 		0.8
(-2.6)
A 		0.9
(-2.6)
A 		0.4
(-2.9)
A 		0.3
(-3)
A 		8
avr 4.1
(3) 		3
(1.2) 		1.7
(-1) 		1.1
(-2) 		1.8
(-0.8) 		0.5
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186366_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6240
Sequence Type Exemplar sequence
Representative Public ID F26A1.13 NCBI
Target Description F26A1.13 /REP_DB=WormBase Gene ID /WP=CE02681 /TR=Q19803 /GB=AAA68255.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065603(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065603 NCBI Caenorhabditis elegans F26A1.13 (F26A1.13) mRNA, complete cds. 11/11 None
SNAP00000001883 ENSEMBL cdna:SNAP chromosome:CEL140:III:4847033:4849811:-1 11/11 None
GENEFINDER00000001888 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4847033:4849811:-1 11/11 None
F26A1.13 ENSEMBL cdna:known chromosome:CEL140:III:4847033:4848928:-1 gene:F26A1.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4847032-4848928(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F26A1.13
Entrez Gene 184951 Entrez gene
SwissProt Q19803 EMBL-EBI
WormBase CE02681 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6298 mismatch repair inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3684 damaged DNA binding inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_498004 F26A1.13 [Caenorhabditis elegans] gb|AAA68255.1| Hypothetical protein F26A1.13 [Caenorhabditis elegans] 0.0
blast CAE71112 Hypothetical protein CBG17965 [Caenorhabditis briggsae] 1.0E-111
blast NP_498005 F26A1.14 [Caenorhabditis elegans] gb|AAA68256.1| Hypothetical protein F26A1.14 [Caenorhabditis elegans] 1.0E-87
blast CAE71112 Hypothetical protein CBG17965 [Caenorhabditis briggsae] 5.0E-71
Protein Domains
Database ID Description E-Value
Pfam IPR002625 EMBL-EBI Smr protein/MutS2 C-terminal 4.0E-26
Pfam IPR002625 EMBL-EBI Smr protein/MutS2 C-terminal 4.0E-26
Sequence
Target Sequence 
>C. ELEGANS:186366_AT
taaaaaagttgcgtcttcaccgagtccacttcgtctttcgttgccgaaaaaatcgaagaa
agaagaggaaaatcatttcctaaagaaaagaagtggaagacattcccaattggaagaaat
ccaattgcttgccattagaactcgacagaaaatcgaagcagatcgcatcacatcttctaa
ttcgatggctgctgcgaaatatcgccaattgataattgtcgatcgagcgtcacgaatgaa
aattgaaaaatcatcggaagtgaaagaacttgatcggaaaattcgagaagcccacaacaa
tccatggtttcttgatttacattacatgtcagttgatggagcagttaaacttgtgaaaga
agcgattgaagcagtcaaatatcatttgaaagctgctagaaaccttgatagacgaatcac
tgtggtaactggatctggtaataattcgaaatgtggagccaagattaaacctcaagtttt
ggcaatgctgcagcacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAAAAAAGTTGCGTCTTCACCGAGT 633 639 819 Antisense
GGAAGAAATCCAATTGCTTGCCATT 675 529 930 Antisense
ATTGCTTGCCATTAGAACTCGACAG 696 5 942 Antisense
GAAGCAGATCGCATCACATCTTCTA 302 341 973 Antisense
ATCTTCTAATTCGATGGCTGCTGCG 40 31 990 Antisense
GGCTGCTGCGAAATATCGCCAATTG 144 541 1005 Antisense
AATTGTCGATCGAGCGTCACGAATG 409 177 1032 Antisense
AATTCGAGAAGCCCACAACAATCCA 87 177 1098 Antisense
GCCCACAACAATCCATGGTTTCTTG 569 285 1108 Antisense
GGTTTCTTGATTTACATTACATGTC 645 505 1124 Antisense
AAGTTTTGGCAATGCTGCAGCACAA 204 157 1292 Antisense
Sequence Source Affymetrix Proprietary Database