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[186365_at]

Description C53C11.2 /REP_DB=WormBase Gene ID /WP=CE04265 /TR=P91185 /GB=AAB42307.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 38      6grp_high1_10_10 > 72      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 54      6grp_total > 73      4grp_total > 02      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9123
1 2 3 4 range
A 1217.4
(-2.7)
P 		905.1
(-2.9)
P 		790.8
(-3)
P 		9913.4
(3)
P 		9123
B 1326.3
(-2.6)
P 		842.6
(-3)
P 		903.5
(-2.9)
P 		8103.8
(3)
P 		7261
C 1350.5
(-2.6)
P 		915.2
(-2.9)
P 		792.8
(-3)
P 		9665.5
(3)
P 		8873
avr 1298.1
(-2.7) 		887.6
(-3) 		829
(-3) 		9227.6
(3) 		8399

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1154
1 2 3 4 5 6 range
A 800.8
(-3)
P 		984.6
(-2)
P 		1955
(3)
P 		1849.7
(2.5)
P 		1179
(-1)
P 		1042
(-1.7)
P 		1154
B 881.3
(-3)
P 		1268.3
(1.4)
P 		1331
(2.1)
P 		1405.7
(3)
P 		1217
(0.8)
P 		1217.8
(0.9)
P 		524
C 924.9
(-3)
P 		1106.2
(-1.6)
P 		1209.1
(-0.7)
P 		1680.9
(3)
P 		1300.7
(-0)
P 		1185.3
(-0.9)
P 		756
avr 869
(-3) 		1119.7
(-1.1) 		1498.4
(1.9) 		1645.4
(3) 		1232.2
(-0.2) 		1148.4
(-0.8) 		776
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1530
1 2 3 4 range
A 443.3
(-1.8)
P 		196.5
(-3)
P 		206.7
(-3)
P 		1451.1
(3)
P 		1255
B 422.9
(-2.2)
P 		208.1
(-3)
P 		209.4
(-3)
P 		1726.9
(3)
P 		1519
C 447.1
(-2.2)
P 		263.1
(-3)
P 		276.3
(-2.9)
P 		1629.8
(3)
P 		1367
avr 437.8
(-2.1) 		222.6
(-3) 		230.8
(-3) 		1602.6
(3) 		1380

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 347
1 2 3 4 5 6 range
A 147.6
(-3)
P 		350.2
(0.8)
P 		425.8
(2.2)
P 		469.1
(3)
P 		355.8
(0.9)
P 		253.7
(-1)
P 		322
B 306.6
(-3)
P 		422.2
(0.7)
P 		323.2
(-2.5)
P 		372.3
(-0.9)
P 		494.5
(3)
P 		454.1
(1.7)
P 		188
C 342.8
(-1.1)
P 		337.5
(-1.4)
P 		307.7
(-3)
P 		338
(-1.4)
P 		420.9
(3)
P 		396.8
(1.7)
P 		113
avr 265.7
(-3) 		370
(1) 		352.2
(0.3) 		393.1
(1.8) 		423.7
(3) 		368.2
(0.9) 		158
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186365_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17332
Sequence Type Exemplar sequence
Representative Public ID C53C11.2 NCBI
Target Description C53C11.2 /REP_DB=WormBase Gene ID /WP=CE04265 /TR=P91185 /GB=AAB42307.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078410(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078410 NCBI Caenorhabditis elegans C53C11.2 (C53C11.2) mRNA, complete cds. 11/11 None
SNAP00000044475 ENSEMBL cdna:SNAP chromosome:CEL140:X:17338289:17338543:1 9/11 None
GENEFINDER00000044477 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:17338289:17338543:1 9/11 None
C53C11.2 ENSEMBL cdna:known chromosome:CEL140:X:17337190:17338543:1 gene:C53C11.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17337189-17338543(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C53C11.2
Entrez Gene 183755 Entrez gene
SwissProt P91185 EMBL-EBI
WormBase CE04265 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB42307 Hypothetical protein C53C11.2 [Caenorhabditis elegans] ref|NP_510811.1| C53C11.2 [Caenorhabditis elegans] 7.0E-43
blast AAB42307 Hypothetical protein C53C11.2 [Caenorhabditis elegans] ref|NP_510811.1| C53C11.2 [Caenorhabditis elegans] 4.0E-25
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510811.1 1 32-54
C53C11.2 1 32-54
SNAP00000044475 1 4-26
GENEFINDER00000044477 1 4-26
Sequence
Target Sequence 
>C. ELEGANS:186365_AT
gcttctcgacgaaatgcttttaccaaaaaccactcaacaaaacgaatcttgtgatgatcc
aatggttcagtttatgggcatcaacatgggcatttgcctcatcctcactgctatagttgc
aattgctgcaatcctgggatgcatactcttattgctttgcgtcaagtttgttactgatcg
agatgaacggaagactcaagctgctcgcaataagatttctgccaacgaagaaaaaactga
gagcggctcagttacatctggcaccaacacaactgcgctgattactgatgaacgtgcagc
attgaccaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTTCTCGACGAAATGCTTTTACCA 9 307 15 Antisense
CAACATGGGCATTTGCCTCATCCTC 32 189 96 Antisense
CCTCATCCTCACTGCTATAGTTGCA 90 269 111 Antisense
CAATCCTGGGATGCATACTCTTATT 595 181 143 Antisense
TACTCTTATTGCTTTGCGTCAAGTT 156 645 158 Antisense
TGAACGGAAGACTCAAGCTGCTCGC 550 571 198 Antisense
GCTGCTCGCAATAAGATTTCTGCCA 86 297 214 Antisense
TGAGAGCGGCTCAGTTACATCTGGC 600 567 252 Antisense
TACATCTGGCACCAACACAACTGCG 585 641 267 Antisense
AACACAACTGCGCTGATTACTGATG 306 135 280 Antisense
TGATGAACGTGCAGCATTGACCACA 150 567 300 Antisense
Sequence Source Affymetrix Proprietary Database