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[186364_at]

Description F33G12.5 /REP_DB=WormBase Gene ID /WP=CE27151 /TR=Q19989 /GB=AAK31513.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 26      6grp_high1_10_10 > 51      4grp_highest_8_8 > 34      4grp_high_8_8 > 58      6grp_highest_nonorm > 62      6grp_total > 40      4grp_total > 61      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 325
1 2 3 4 range
A 509.3
(3)
P 		380.1
(0.5)
P 		440.5
(1.7)
P 		194
(-3)
P 		315
B 511.7
(3)
P 		389.5
(0.4)
P 		456.7
(1.8)
P 		226.9
(-3)
P 		285
C 471.5
(2.1)
P 		328.3
(-0.7)
P 		518.6
(3)
P 		210.2
(-3)
P 		308
avr 497.5
(3) 		366
(0.3) 		471.9
(2.5) 		210.4
(-3) 		287

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 275
1 2 3 4 5 6 range
A 447.9
(-1.9)
P 		541.6
(0.8)
P 		500
(-0.4)
P 		617.3
(3)
P 		411.9
(-3)
P 		448.6
(-1.9)
P 		205
B 466.2
(-1.8)
P 		525.8
(-0.5)
P 		685
(3)
P 		554.6
(0.2)
P 		409.6
(-3)
P 		441.4
(-2.3)
P 		275
C 490.3
(-1.3)
P 		518.5
(-0.1)
P 		595.7
(3)
P 		537.8
(0.6)
P 		448.1
(-3)
P 		467.7
(-2.2)
P 		148
avr 468.1
(-1.4) 		528.6
(0.7) 		593.6
(3) 		569.9
(2.2) 		423.2
(-3) 		452.6
(-2) 		170
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 157
1 2 3 4 range
A 185.4
(3)
P 		82.5
(-0.9)
P 		115.1
(0.3)
P 		28.4
(-3)
P 		157
B 163.2
(3)
P 		96.2
(-0.5)
P 		105.8
(0)
P 		48.3
(-3)
P 		115
C 156.1
(2)
P 		94.4
(-0.6)
P 		180.8
(3)
P 		35.4
(-3)
P 		145
avr 168.2
(3) 		91
(-0.5) 		133.9
(1.4) 		37.4
(-3) 		131

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 110
1 2 3 4 5 6 range
A 82.6
(-3)
P 		192.6
(3)
P 		108.9
(-1.6)
P 		156.6
(1)
P 		124.3
(-0.7)
P 		109.2
(-1.5)
P 		110
B 162.2
(0.3)
P 		175
(3)
P 		166.3
(1.1)
P 		146.9
(-3)
P 		166.4
(1.2)
P 		164.6
(0.8)
P 		28
C 181.7
(3)
P 		158.2
(1.1)
P 		151.6
(0.5)
P 		108.1
(-3)
P 		145
(0)
P 		156.6
(1)
P 		74
avr 142.2
(-2.2) 		175.3
(3) 		142.3
(-2.2) 		137.2
(-3) 		145.2
(-1.7) 		143.5
(-2) 		38
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186364_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4067
Sequence Type Exemplar sequence
Representative Public ID F33G12.5 NCBI
Target Description F33G12.5 /REP_DB=WormBase Gene ID /WP=CE27151 /TR=Q19989 /GB=AAK31513.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062528(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062528 NCBI Caenorhabditis elegans F33G12.5 (F33G12.5) mRNA, complete cds. 10/11 None
SNAP00000025576 ENSEMBL cdna:SNAP chromosome:CEL140:II:5036848:5040018:-1 10/11 None
GENEFINDER00000025581 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5036848:5040018:-1 10/11 None
F33G12.5.1 ENSEMBL cdna:known chromosome:CEL140:II:5036547:5040075:-1 gene:F33G12.5 10/11 None
F33G12.5.2 ENSEMBL cdna:known chromosome:CEL140:II:5036547:5040083:-1 gene:F33G12.5 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5036774-5040440(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F33G12.5
Entrez Gene 173870 Entrez gene
SwissProt Q19989 EMBL-EBI
WormBase CE37768 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1592156_AT similar to Golgi autoantigen, golgin subfamily a, 2 cfa
CANINE:1583750_AT similar to Golgi autoantigen, golgin subfamily a, 2 cfa
CANINE_2:CFA.1396.1.A1_AT similar to Golgi autoantigen, golgin subfamily a, 2 cfa
CANINE_2:CFA.17444.1.S1_AT similar to Golgi autoantigen, golgin subfamily a, 2 cfa
CANINE_2:CFA.18314.1.S1_S_AT similar to Golgi autoantigen, golgin subfamily a, 2 cfa
CANINE_2:CFA.19862.1.S1_S_AT similar to Golgi autoantigen, golgin subfamily a, 2 cfa
CANINE_2:CFAAFFX.30723.1.S1_S_AT similar to Golgi autoantigen, golgin subfamily a, 2 cfa
CANINE_2:CFAAFFX.30729.1.S1_AT similar to Golgi autoantigen, golgin subfamily a, 2 cfa
DROSOPHILA_2:1632677_A_AT dm
DROSGENOME1:141343_AT dm
CHICKEN:GGA.14024.1.S1_S_AT golgi autoantigen, golgin subfamily a, 2 gga
CHICKEN:GGAAFFX.26348.1.S1_S_AT golgi autoantigen, golgin subfamily a, 2 gga
HG-U133_PLUS_2:211059_S_AT golgi autoantigen, golgin subfamily a, 2 hs
HG-U133A:211059_S_AT golgi autoantigen, golgin subfamily a, 2 hs
HG-U133A_2:211059_S_AT golgi autoantigen, golgin subfamily a, 2 hs
HG-U133_PLUS_2:204384_AT golgi autoantigen, golgin subfamily a, 2 hs
HG-U133A:204384_AT golgi autoantigen, golgin subfamily a, 2 hs
HG-U133A_2:204384_AT golgi autoantigen, golgin subfamily a, 2 hs
HU35KSUBA:HUM_ALU_AT golgi autoantigen, golgin subfamily a, 2 hs
HU35KSUBB:HUM_ALU_AT golgi autoantigen, golgin subfamily a, 2 hs
HU35KSUBC:HUM_ALU_AT golgi autoantigen, golgin subfamily a, 2 hs
HU35KSUBD:HUM_ALU_AT golgi autoantigen, golgin subfamily a, 2 hs
HUGENEFL:HUM_ALU_AT golgi autoantigen, golgin subfamily a, 2 hs
HC-G110:HUM_ALU_AT golgi autoantigen, golgin subfamily a, 2 hs
HU35KSUBA:RC_AA405698_AT golgi autoantigen, golgin subfamily a, 2 hs
HUGENEFL:L06147_AT golgi autoantigen, golgin subfamily a, 2 hs
U133_X3P:G4758451_3P_S_AT golgi autoantigen, golgin subfamily a, 2 hs
U133_X3P:G13623544_3P_S_AT golgi autoantigen, golgin subfamily a, 2 hs
U133_X3P:HS.24049.0.S1_3P_AT golgi autoantigen, golgin subfamily a, 2 hs
U133_X3P:35436_3P_AT golgi autoantigen, golgin subfamily a, 2 hs
U133_X3P:211059_3P_S_AT golgi autoantigen, golgin subfamily a, 2 hs
U133_X3P:204384_3P_AT golgi autoantigen, golgin subfamily a, 2 hs
HG-U133_PLUS_2:225672_AT golgi autoantigen, golgin subfamily a, 2 hs
HG-U133B:225672_AT golgi autoantigen, golgin subfamily a, 2 hs
HG-U133A_2:35436_AT golgi autoantigen, golgin subfamily a, 2 hs
HG-FOCUS:35436_AT golgi autoantigen, golgin subfamily a, 2 hs
HG-U133_PLUS_2:35436_AT golgi autoantigen, golgin subfamily a, 2 hs
HG-U133A:35436_AT golgi autoantigen, golgin subfamily a, 2 hs
HG-U95AV2:35436_AT golgi autoantigen, golgin subfamily a, 2 hs
HG-U95B:50356_AT golgi autoantigen, golgin subfamily a, 2 hs
HG-U95E:70058_AT golgi autoantigen, golgin subfamily a, 2 hs
HG-U95E:70061_S_AT golgi autoantigen, golgin subfamily a, 2 hs
HG-U95D:75263_AT golgi autoantigen, golgin subfamily a, 2 hs
HG-U95D:81168_AT Golgi autoantigen, golgin subfamily a, 2 hs
HU35KSUBA:AA495845_AT Golgi autoantigen, golgin subfamily a, 2 hs
MOE430A:1448625_AT golgi autoantigen, golgin subfamily a, 2 mm
MOUSE430A_2:1448625_AT golgi autoantigen, golgin subfamily a, 2 mm
MOUSE430_2:1448625_AT golgi autoantigen, golgin subfamily a, 2 mm
MG-U74BV2:163110_AT golgi autoantigen, golgin subfamily a, 2 mm
MU19KSUBA:TC19089_AT Golgi autoantigen, golgin subfamily a, 2, mRNA (cDNA clone MGC:11816 IMAGE:3596079) mm
RG-U34A:RC_AA944423_AT cis-Golgi matrix protein GM130 rn
RAE230A:1386942_AT cis-Golgi matrix protein GM130 rn
RAT230_2:1386942_AT cis-Golgi matrix protein GM130 rn
Protein Similarities
Method ID Description E-Value
blast AAK31513 Hypothetical protein F33G12.5 [Caenorhabditis elegans] ref|NP_494929.3| F33G12.5 [Caenorhabditis elegans] 0.0
blast T16244 hypothetical protein F33G12.5 - Caenorhabditis elegans 0.0
blast CAE59026 Hypothetical protein CBG02303 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:186364_AT
cacgttgttctctatcagcatcagagaaaattggttcgtgaaaggcttcgtgtaaaagat
gaacaattgaaggctatggaagaggacagaacgaaaactgttgcacgatgccaagaactg
caaaatgtgttaatgactgtacttaacaaaggtggagtattaaaggaataccagacaagc
tcaatctcccgaaaagcagctcgccgagtttcccgaagctatagccattcgacagttgat
gaaatgagcggagacgaagatgttttggtggacgccaaattggaagaagttccagagcgt
gaaaaagtacatggtaatagtgatgatgagaagattccaagtactccaccaccaactgtg
ttggaagctcaaaatagtccacgattatcggattgttctgctgacaaagataatagtgat
actttcgggcaaacccaagatgcatctgttagacgaattttggaaattatttctgatatc
agtgtaaagaccccaaattcta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACGTTGTTCTCTATCAGCATCAGA 472 199 2428 Antisense
ATTGGTTCGTGAAAGGCTTCGTGTA 627 3 2457 Antisense
GAACGAAAACTGTTGCACGATGCCA 322 345 2516 Antisense
GAATACCAGACAAGCTCAATCTCCC 77 327 2593 Antisense
TCAATCTCCCGAAAAGCAGCTCGCC 661 633 2608 Antisense
GAGTTTCCCGAAGCTATAGCCATTC 213 399 2633 Antisense
AAGCTATAGCCATTCGACAGTTGAT 271 151 2643 Antisense
GAGAAGATTCCAAGTACTCCACCAC 612 391 2755 Antisense
CTCCACCACCAACTGTGTTGGAAGC 498 235 2771 Antisense
GAAGCTCAAAATAGTCCACGATTAT 321 343 2791 Antisense
ATCAGTGTAAAGACCCCAAATTCTA 389 21 2905 Antisense
Sequence Source Affymetrix Proprietary Database