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[186362_s_at]

Description H04M03.4 /REP_DB=WormBase Gene ID /WP=CE20923 /TR=Q9TYR1 /GB=AAD12787.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 08      6grp_high1_10_10 > 80      6grp_highest_nonorm > 34      6grp_total > 71      4grp_total > 49      6grp_high1_sub > 02_03_04_05      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2469
1 2 3 4 range
A 72.9
(-3)
A 		2210.7
(2.2)
P 		2540.6
(3)
P 		179.8
(-2.7)
A 		2468
B 71.3
(-3)
A 		2023.7
(2.2)
P 		2328.2
(3)
P 		127.3
(-2.9)
A 		2257
C 75.9
(-3)
A 		2168.3
(2.2)
P 		2487.3
(3)
P 		149.3
(-2.8)
A 		2411
avr 73.4
(-3) 		2134.2
(2.2) 		2452
(3) 		152.1
(-2.8) 		2379

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4844
1 2 3 4 5 6 range
A 699.4
(-2.8)
P 		3718
(1)
P 		2455.3
(-0.6)
P 		5324.2
(3)
P 		2776.1
(-0.2)
P 		571
(-3)
P 		4753
B 480.6
(-3)
P 		3652.6
(1.9)
P 		3025.4
(1)
P 		4329.3
(3)
P 		2758.4
(0.6)
P 		623.9
(-2.8)
P 		3849
C 631.9
(-3)
P 		3571
(1.5)
P 		2865.7
(0.4)
P 		4561.8
(3)
P 		2978.7
(0.6)
P 		612.6
(-3)
P 		3949
avr 604
(-3) 		3647.2
(1.4) 		2782.1
(0.2) 		4738.4
(3) 		2837.7
(0.2) 		602.5
(-3) 		4136
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 844
1 2 3 4 range
A 26.5
(-3)
A 		479.9
(1.3)
P 		664.2
(3)
P 		26.3
(-3)
A 		638
B 22.7
(-3)
A 		499.8
(2.5)
P 		539.5
(3)
P 		27.1
(-2.9)
A 		517
C 25.1
(-3)
A 		623.4
(1.3)
P 		866.9
(3)
P 		25.2
(-3)
A 		842
avr 24.8
(-3) 		534.4
(1.6) 		690.2
(3) 		26.2
(-3) 		665

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1222
1 2 3 4 5 6 range
A 128.9
(-3)
P 		1322.3
(2.9)
P 		534.7
(-1)
P 		1350.4
(3)
P 		837.7
(0.5)
P 		139
(-3)
P 		1222
B 167.2
(-3)
P 		1215.8
(3)
P 		734.7
(0.2)
P 		1146.7
(2.6)
P 		1120.7
(2.5)
P 		232.6
(-2.6)
P 		1049
C 234.2
(-2.8)
P 		1089.6
(3)
P 		729.4
(0.6)
P 		917.4
(1.8)
P 		963.9
(2.1)
P 		205.1
(-3)
P 		885
avr 176.8
(-3) 		1209.2
(3) 		666.3
(-0.2) 		1138.2
(2.6) 		974.1
(1.6) 		192.2
(-2.9) 		1032
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186362_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10963
Sequence Type Exemplar sequence
Representative Public ID H04M03.4 NCBI
Target Description H04M03.4 /REP_DB=WormBase Gene ID /WP=CE20923 /TR=Q9TYR1 /GB=AAD12787.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068483(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068483 NCBI Caenorhabditis elegans H04M03.4 (H04M03.4) mRNA, complete cds. 11/11 None
SNAP00000034801 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5885820:5889558:1 11/11 None
GENEFINDER00000034811 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5885820:5889558:1 11/11 None
H04M03.4.2 ENSEMBL cdna:known chromosome:CEL140:IV:5885817:5889738:1 gene:H04M03.4 11/11 None
H04M03.4.1 ENSEMBL cdna:known chromosome:CEL140:IV:5885819:5889789:1 gene:H04M03.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5885825-5889564(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl H04M03.4
Entrez Gene 177358 Entrez gene
SwissProt Q9TYR1 EMBL-EBI
WormBase CE38614 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAI38753 UDP-galactopyranose mutase [Caenorhabditis elegans] gb|AAD12787.2| Hypothetical protein H04M03.4 [Caenorhabditis elegans] ref|NP_500884.2| H04M03.4 [Caenorhabditis elegans] tpg|DAA05693.1| TPA: UDP-galactopyranose mutase [Caenorhabditis elegans] 0.0
blast T33865 hypothetical protein H04M03.4 - Caenorhabditis elegans 0.0
blast CAE72630 Hypothetical protein CBG19828 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:186362_S_AT
tgatgttcttcttaacactgctccaattgatcaacttgtgaacaacacacaaatcactgc
tccattggatattgttcataataaggtgttcattgtgggagttggactccgcaagccaat
gacctcattcctcgagaaattcacatggctctacttcccagatcgtgaagttccattctt
ccgtgtcacaattctcagcagatacggagaagtgactccagatggtgataagtattggtc
tgtcatgtgcgagtgtgctcggccaatcgatgatccgatcaccgaggaagagatggtcaa
gaagacacttgatggacttgtcatcaaggatatgatcactcgtgaggctattgagtcggt
ttattccattactttgccatatggatacccaattccaactccaaatcgtgaccgtgagct
tgcccgtgctcacggagagctcgaacgtcatcaaatctattctcgtggacgtttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGATGTTCTTCTTAACACTGCTCCA 372 567 864 Antisense
AACAACACACAAATCACTGCTCCAT 228 135 904 Antisense
GAGTTGGACTCCGCAAGCCAATGAC 385 397 962 Antisense
GACCTCATTCCTCGAGAAATTCACA 370 383 984 Antisense
GAAATTCACATGGCTCTACTTCCCA 456 363 999 Antisense
TCCATTCTTCCGTGTCACAATTCTC 512 591 1035 Antisense
TGGTCTGTCATGTGCGAGTGTGCTC 427 551 1099 Antisense
GTGTGCTCGGCCAATCGATGATCCG 536 487 1116 Antisense
GTCGGTTTATTCCATTACTTTGCCA 376 471 1218 Antisense
ATGGATACCCAATTCCAACTCCAAA 37 53 1244 Antisense
TCAAATCTATTCTCGTGGACGTTTC 185 629 1314 Antisense
Sequence Source Affymetrix Proprietary Database