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[186361_at]

Description C10G11.7 /REP_DB=WormBase Gene ID /WP=CE08086 /TR=P91027 /GB=AAB42247.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 81      6grp_high1_10_10 > 28      4grp_highest_8_8 > 01      4grp_high_8_8 > 45      6grp_highest_nonorm > 01      6grp_total > 18      4grp_total > 50      6grp_highest_sub > Cu      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1227
1 2 3 4 range
A 1223.4
(-2)
P 		1998.2
(3)
P 		1460.8
(-0.4)
P 		1063.4
(-3)
P 		935
B 1364.8
(-1.4)
P 		2062
(2.9)
P 		2071.3
(3)
P 		1111.8
(-3)
P 		960
C 1313.4
(-1.3)
P 		2191.4
(3)
P 		1854.1
(1.3)
P 		964.9
(-3)
P 		1227
avr 1300.5
(-1.5) 		2083.9
(3) 		1795.4
(1.3) 		1046.7
(-3) 		1037

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1837
1 2 3 4 5 6 range
A 2622
(3)
P 		2268.9
(1.3)
P 		1400
(-3)
P 		1833.1
(-0.9)
P 		1606.9
(-2)
P 		2215.3
(1)
P 		1222
B 2329.3
(3)
P 		1618.9
(-1.6)
P 		1409.9
(-3)
P 		1520.2
(-2.3)
P 		1591.3
(-1.8)
P 		1693.3
(-1.2)
P 		919
C 3237.3
(3)
P 		1536.1
(-2.8)
P 		1738.5
(-2.2)
P 		1491.9
(-3)
P 		2103.1
(-0.9)
P 		1683.1
(-2.3)
P 		1745
avr 2729.5
(3) 		1808
(-1.6) 		1516.1
(-3) 		1615.1
(-2.5) 		1767.1
(-1.8) 		1863.9
(-1.3) 		1213
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 491
1 2 3 4 range
A 445.4
(3)
P 		433.8
(2.8)
P 		381.9
(1.7)
P 		155.7
(-3)
P 		290
B 435.2
(1.4)
P 		509.3
(3)
P 		480
(2.4)
P 		236.9
(-3)
P 		272
C 434.8
(0.4)
P 		630
(2.8)
P 		646.2
(3)
P 		162.7
(-3)
P 		484
avr 438.5
(1.5) 		524.4
(3) 		502.7
(2.6) 		185.1
(-3) 		339

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 900
1 2 3 4 5 6 range
A 483.3
(-0.9)
P 		806.9
(3)
P 		304.9
(-3)
P 		464.9
(-1.1)
P 		484.9
(-0.8)
P 		539.3
(-0.2)
P 		502
B 810.5
(3)
P 		538.9
(-0.5)
P 		342.4
(-3)
P 		402.7
(-2.2)
P 		646.5
(0.9)
P 		631.4
(0.7)
P 		468
C 1199.9
(3)
P 		468.7
(-1.9)
P 		442.5
(-2)
P 		300
(-3)
P 		680.5
(-0.5)
P 		563.4
(-1.2)
P 		900
avr 831.2
(3) 		604.8
(0.1) 		363.3
(-3) 		389.2
(-2.7) 		604
(0.1) 		578
(-0.2) 		468
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186361_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2051
Sequence Type Exemplar sequence
Representative Public ID C10G11.7 NCBI
Target Description C10G11.7 /REP_DB=WormBase Gene ID /WP=CE08086 /TR=P91027 /GB=AAB42247.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059412(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059412 NCBI Caenorhabditis elegans C10G11.7 (C10G11.7) mRNA, complete cds. 11/11 None
SNAP00000041161 ENSEMBL cdna:SNAP chromosome:CEL140:I:6293143:6295735:1 11/11 None
GENEFINDER00000041168 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6293143:6295735:1 11/11 None
C10G11.7.3 ENSEMBL cdna:known chromosome:CEL140:I:6293106:6297473:1 gene:C10G11.7 11/11 A 
C10G11.7.2 ENSEMBL cdna:known chromosome:CEL140:I:6293108:6297473:1 gene:C10G11.7 11/11 A 
C10G11.7.1 ENSEMBL cdna:known chromosome:CEL140:I:6293108:6297473:1 gene:C10G11.7 11/11 A 
C10G11.7.4 ENSEMBL cdna:known chromosome:CEL140:I:6293108:6297473:1 gene:C10G11.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6293071-6295664(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C10G11.7
Entrez Gene 172326 Entrez gene
SwissProt P91027 EMBL-EBI
WormBase CE08086 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB42247 Hypothetical protein C10G11.7 [Caenorhabditis elegans] ref|NP_491813.1| C10G11.7 [Caenorhabditis elegans] 1.0E-126
blast AAB42247 Hypothetical protein C10G11.7 [Caenorhabditis elegans] ref|NP_491813.1| C10G11.7 [Caenorhabditis elegans] 1.0E-119
blast CAE67156 Hypothetical protein CBG12581 [Caenorhabditis briggsae] 1.0E-112
Sequence
Target Sequence 
>C. ELEGANS:186361_AT
gaaaagatcaggccacgactcgcaaccaattcattggattcttcaaagatggagatgtcc
tcgccaagctggccaacgctcttgagccaggagcagttgaagtcgctgccgctgaggaaa
acgccgatgctgcagcccagaaagaagttcagaagaagaacattgatgccttcggagctt
gggctcaaaagactcttggaaccgaggctgctccagtaaccaacgaagatcttcttgaaa
agggaaaagctggatacacagctgttttccaaactctctggcaactcggagttcaggcca
aggaaaagtttgacaaggaaggattcaatgttgacaccattgttcagcttgcaaactctg
tcgtcaagagcggattgttgaccacaatcctaggattcttcagaagaaatcggcaagctg
ctgctgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAAGATCAGGCCACGACTCGCAA 208 353 452 Antisense
AAGATGGAGATGTCCTCGCCAAGCT 608 153 497 Antisense
AGCTGGCCAACGCTCTTGAGCCAGG 210 81 518 Antisense
TTGAAGTCGCTGCCGCTGAGGAAAA 578 701 548 Antisense
TGAGGAAAACGCCGATGCTGCAGCC 677 567 564 Antisense
TTGATGCCTTCGGAGCTTGGGCTCA 397 705 614 Antisense
AAGACTCTTGGAACCGAGGCTGCTC 483 153 640 Antisense
GCTGCTCCAGTAACCAACGAAGATC 382 297 658 Antisense
GTTTTCCAAACTCTCTGGCAACTCG 297 447 715 Antisense
GTTGACACCATTGTTCAGCTTGCAA 450 437 781 Antisense
AAGAAATCGGCAAGCTGCTGCTGCT 561 151 855 Antisense
Sequence Source Affymetrix Proprietary Database