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[186360_at]

Description K07C11.8 /REP_DB=WormBase Gene ID /WP=CE07350 /TR=Q21269 /GB=AAA96178.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 31      6grp_high1_10_10 > 12      4grp_highest_8_8 > 07      4grp_high_8_8 > 21      6grp_highest_nonorm > 41      6grp_total > 22      4grp_total > 18      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Hat      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 908
1 2 3 4 range
A 518.9
(-3)
P 		822.9
(-1)
P 		552.5
(-2.8)
P 		1427
(3)
P 		908
B 560.9
(-3)
P 		663.2
(-1.8)
P 		642
(-2)
P 		1058.9
(3)
P 		498
C 618.5
(-2.4)
P 		721.5
(-1.6)
P 		538
(-3)
P 		1300.1
(3)
P 		762
avr 566.1
(-3) 		735.9
(-1.5) 		577.5
(-2.9) 		1262
(3) 		696

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 312
1 2 3 4 5 6 range
A 735.4
(1.8)
P 		717.4
(1.3)
P 		781.5
(3)
P 		656.8
(-0.4)
P 		565.5
(-2.8)
P 		558.8
(-3)
P 		223
B 716.1
(2.7)
P 		710.9
(2.6)
P 		729
(3)
P 		582.5
(-0.4)
P 		682.4
(1.9)
P 		469.4
(-3)
P 		260
C 730.3
(2.5)
P 		748.1
(3)
P 		544.3
(-3)
P 		654
(0.2)
P 		570.3
(-2.2)
P 		613.4
(-1)
P 		204
avr 727.3
(3) 		725.5
(2.9) 		684.9
(1.6) 		631.1
(-0.2) 		606.1
(-1) 		547.2
(-3) 		180
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 188.9
(1.1)
P 		178.6
(0.2)
P 		144.4
(-3)
P 		208.9
(3)
P 		65
B 178.9
(-0.6)
P 		163.8
(-1.8)
P 		148.8
(-3)
P 		225.6
(3)
P 		77
C 204.8
(0.3)
P 		207.4
(0.8)
P 		187.5
(-3)
P 		219.2
(3)
P 		32
avr 190.9
(0.2) 		183.3
(-0.6) 		160.2
(-3) 		217.9
(3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 146
1 2 3 4 5 6 range
A 135.6
(-3)
P 		255.2
(3)
P 		170.2
(-1.3)
P 		166.6
(-1.4)
P 		170.6
(-1.2)
P 		136
(-3)
P 		120
B 249.2
(1.6)
P 		236.6
(1)
P 		177
(-1.9)
P 		154.3
(-3)
P 		277.2
(3)
P 		175
(-2)
P 		123
C 270.7
(3)
P 		228.3
(1.2)
P 		138.5
(-2.7)
P 		131.5
(-3)
P 		184.5
(-0.7)
P 		205.3
(0.2)
P 		139
avr 218.5
(1.6) 		240
(3) 		161.9
(-2.3) 		150.8
(-3) 		210.8
(1) 		172.1
(-1.6) 		89
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186360_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11355
Sequence Type Exemplar sequence
Representative Public ID K07C11.8 NCBI
Target Description K07C11.8 /REP_DB=WormBase Gene ID /WP=CE07350 /TR=Q21269 /GB=AAA96178.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072716(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072716 NCBI Caenorhabditis elegans K07C11.8 (K07C11.8) mRNA, complete cds. 11/11 None
SNAP00000021027 ENSEMBL cdna:SNAP chromosome:CEL140:V:8218350:8220291:-1 11/11 None
GENEFINDER00000021042 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8218350:8220303:-1 11/11 None
K07C11.8.2 ENSEMBL cdna:known chromosome:CEL140:V:8218178:8220294:-1 gene:K07C11.8 11/11 None
K07C11.8.1 ENSEMBL cdna:known chromosome:CEL140:V:8218219:8220302:-1 gene:K07C11.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8218350-8220304(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K07C11.8
Entrez Gene 187106 Entrez gene
SwissProt Q21269 EMBL-EBI
WormBase CE37780 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA96178 Hypothetical protein K07C11.8 [Caenorhabditis elegans] ref|NP_505117.2| K07C11.8 [Caenorhabditis elegans] 2.0E-61
blast CAE66103 Hypothetical protein CBG11323 [Caenorhabditis briggsae] 9.0E-58
blast CAE66103 Hypothetical protein CBG11323 [Caenorhabditis briggsae] 2.0E-55
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505117.2 1 5-27
K07C11.8.2 1 5-27
K07C11.8.1 1 5-27
SNAP00000021027 1 5-27
GENEFINDER00000021042 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:186360_AT
ggcaattattgccatcgtcatagtttgttgtgttatgttctttttatggcttctatcaat
ggcaatttgtcctgatgcaatggtcaatgccacgtcaggaagaaaagacaaatactgtga
atcgcgagactccaaagaacttattgctcgttgcgaagagggagacatacgacatgattt
cattaaaaacgtcgtatcagctgagaagatgcaacaaccgctatcaacaagaagatccag
tgataagaagttgagcgttgtaccggaagccgatgagcagagcactgttcaatccacgat
tcactcgattcgtccaacaattcttcgtcaaccatcggttccagttcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCAATTATTGCCATCGTCATAGTT 588 533 39 Antisense
TATGTTCTTTTTATGGCTTCTATCA 514 655 72 Antisense
GGCAATTTGTCCTGATGCAATGGTC 101 535 99 Antisense
CAATGGTCAATGCCACGTCAGGAAG 279 179 116 Antisense
AATACTGTGAATCGCGAGACTCCAA 224 171 149 Antisense
GAAGATGCAACAACCGCTATCAACA 259 339 243 Antisense
AGTTGAGCGTTGTACCGGAAGCCGA 596 61 287 Antisense
GAGCAGAGCACTGTTCAATCCACGA 576 389 313 Antisense
ATCCACGATTCACTCGATTCGTCCA 173 41 330 Antisense
TTCGTCCAACAATTCTTCGTCAACC 383 695 347 Antisense
TTCGTCAACCATCGGTTCCAGTTCG 256 695 362 Antisense
Sequence Source Affymetrix Proprietary Database