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[186359_at]

Description Y49F6C.6 /REP_DB=WormBase Gene ID /WP=CE22270 /TR=Q9TYJ5 /GB=AAD12861.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 62      4grp_total > 22      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 7.8
(-3)
A 		13.6
(-0.9)
A 		11.1
(-1.8)
A 		24.2
(3)
A 		16
B 9.8
(-2.5)
A 		7.8
(-2.9)
A 		7.1
(-3)
A 		37
(3)
A 		30
C 51.4
(3)
A 		4.1
(-3)
A 		4.9
(-2.9)
A 		11
(-2.1)
A 		47
avr 23
(2.6) 		8.5
(-2.7) 		7.7
(-3) 		24.1
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 7.3
(-2.2)
A 		8.4
(-1)
A 		9.1
(-0.3)
A 		10.7
(1.3)
A 		6.5
(-3)
A 		12.3
(3)
A 		6
B 7.6
(-2.2)
A 		9.4
(-0.7)
A 		13.9
(3)
A 		9.4
(-0.7)
A 		7.3
(-2.4)
A 		6.6
(-3)
A 		7
C 5.9
(-2)
A 		8.3
(-0.4)
A 		11.2
(1.5)
A 		13.4
(3)
A 		4.9
(-2.7)
A 		4.4
(-3)
A 		9
avr 6.9
(-2.2) 		8.7
(-0.1) 		11.4
(3) 		11.2
(2.8) 		6.2
(-3) 		7.8
(-1.2) 		5
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 2.8
(-3)
A 		3
(-1.3)
A 		2.9
(-2.1)
A 		3.5
(3)
A 		1
B 3.1
(-1.6)
A 		1.9
(-2.7)
A 		1.6
(-3)
A 		7.9
(3)
A 		6
C 17
(3)
A 		1.2
(-3)
A 		1.7
(-2.8)
A 		1.9
(-2.7)
A 		16
avr 7.6
(3) 		2
(-3) 		2.1
(-2.9) 		4.4
(-0.4) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 1.3
(-3)
A 		3
(3)
A 		2
(-0.5)
A 		2.7
(1.9)
A 		2
(-0.5)
A 		3
(3)
A 		2
B 2.7
(-1.7)
A 		3.1
(1)
A 		3.4
(3)
A 		2.5
(-3)
A 		3
(0.3)
A 		2.5
(-3)
A 		1
C 2.2
(0.2)
A 		2.5
(1.6)
A 		2.8
(3)
A 		2.7
(2.5)
A 		1.6
(-2.5)
A 		1.5
(-3)
A 		1
avr 2.1
(-3) 		2.9
(3) 		2.7
(1.5) 		2.6
(0.8) 		2.2
(-2.3) 		2.3
(-1.5) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186359_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4477
Sequence Type Exemplar sequence
Representative Public ID Y49F6C.6 NCBI
Target Description Y49F6C.6 /REP_DB=WormBase Gene ID /WP=CE22270 /TR=Q9TYJ5 /GB=AAD12861.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062118(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062118 NCBI Caenorhabditis elegans Y49F6C.6 (Y49F6C.6) mRNA, complete cds. 11/11 None
GENEFINDER00000037279 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3362328:3365956:-1 10/11 None
Y49F6C.6 ENSEMBL cdna:known chromosome:CEL140:II:3363341:3365956:-1 gene:Y49F6C.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000037270 1/11 Cross Hyb Matching Probes None
SNAP00000037271 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3363339-3364159(-) 50.06 50.06
Public Domain and Genome References
Gene Title
Ensembl Y49F6C.6
Entrez Gene 190087 Entrez gene
SwissProt Q9TYJ5 EMBL-EBI
WormBase CE32756 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD12861 Hypothetical protein Y49F6C.6 [Caenorhabditis elegans] ref|NP_494519.2| Y49F6C.6 [Caenorhabditis elegans] 1.0E-121
blast AAD12861 Hypothetical protein Y49F6C.6 [Caenorhabditis elegans] ref|NP_494519.2| Y49F6C.6 [Caenorhabditis elegans] 6.0E-47
Protein Domains
Database ID Description E-Value
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 1.6E-5
Sequence
Target Sequence 
>C. ELEGANS:186359_AT
accatatcccacgaataactccaaacctatatctcttcaaaagacaaaaactcaattttt
cctaaactacagtaatcctacagtactcctacagtacctctacagtactactacagtacc
ccgaccatatcccactactaaccccaaactaatatccctccaacagccgaaaacgccttt
cctttcgccaagaattcgattggttcttcgagaacatgaacgatgccgaggtgctctttc
agatgtatgggttgctggagcagctcgaggagcggttcgatgcgcaaaactttacaataa
aactcgacatgtgattcgaaagatttctgccaataaaagaaaattgtttcctttgttcta
ttgttatacatacatacatacgtataaaaatcaggtgagcccagagaaaaatgcaaatca
gaaggggaagaggatgttcccacggttcatggttggagtggccttgatttttgaacttaa
taattatgacatcgagaccagctgctcccacagttcttcaagcttttcggctcggcttag
ctctgcagactatgaggtttactgggcccgcgctctccagatcctacacgtcggagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCATATCCCACGAATAACTCCAAA 378 85 270 Antisense
TAACTCCAAACCTATATCTCTTCAA 82 639 285 Antisense
GCCTTTCCTTTCGCCAAGAATTCGA 633 275 444 Antisense
CGATGCCGAGGTGCTCTTTCAGATG 300 249 490 Antisense
GCAGCTCGAGGAGCGGTTCGATGCG 452 311 529 Antisense
ATTGTTTCCTTTGTTCTATTGTTAT 200 5 612 Antisense
GAAGAGGATGTTCCCACGGTTCATG 705 337 696 Antisense
TTATGACATCGAGACCAGCTGCTCC 108 679 753 Antisense
TCGGCTTAGCTCTGCAGACTATGAG 371 607 801 Antisense
AGACTATGAGGTTTACTGGGCCCGC 193 69 816 Antisense
CTCTCCAGATCCTACACGTCGGAGG 490 231 842 Antisense
Sequence Source Affymetrix Proprietary Database