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[186356_at]

Description ZC239.16 /REP_DB=WormBase Gene ID /WP=CE15140 /TR=P91564 /GB=AAB37953.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 38      6grp_high1_10_10 > 72      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 81      6grp_total > 73      4grp_total > 02      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1877
1 2 3 4 range
A 248.8
(-2.6)
P 		187.6
(-2.8)
P 		109.9
(-3)
P 		1979
(3)
P 		1869
B 114.3
(-3)
P 		180
(-2.8)
P 		125
(-3)
P 		1791.8
(3)
P 		1678
C 193.9
(-2.9)
P 		188.6
(-2.9)
P 		164.8
(-3)
P 		1986.9
(3)
P 		1822
avr 185.7
(-2.8) 		185.4
(-2.8) 		133.2
(-3) 		1919.2
(3) 		1786

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 371
1 2 3 4 5 6 range
A 71.6
(-3)
P 		240.3
(-0.3)
P 		442.2
(3)
P 		375.9
(1.9)
P 		275
(0.3)
P 		173.4
(-1.4)
P 		371
B 153.4
(-3)
P 		207.2
(-1.7)
P 		398.8
(3)
P 		248.5
(-0.7)
P 		315.5
(1)
P 		219.3
(-1.4)
P 		245
C 123.9
(-3)
P 		237.2
(0.1)
P 		201.8
(-0.8)
P 		273.8
(1.2)
P 		335.7
(2.9)
P 		340.4
(3)
P 		217
avr 116.3
(-3) 		228.2
(-0.1) 		347.6
(3) 		299.4
(1.7) 		308.7
(2) 		244.4
(0.3) 		231
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 353
1 2 3 4 range
A 90.6
(-1.6)
P 		40.7
(-2.7)
P 		28.7
(-3)
P 		289.7
(3)
P 		261
B 36.4
(-2.9)
P 		44.5
(-2.7)
P 		29
(-3)
P 		381.8
(3)
P 		353
C 64.2
(-2.8)
P 		54.2
(-3)
P 		57.4
(-2.9)
P 		335
(3)
P 		281
avr 63.7
(-2.5) 		46.5
(-2.8) 		38.4
(-3) 		335.5
(3) 		297

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 115
1 2 3 4 5 6 range
A 13.2
(-3)
P 		85.5
(2.2)
P 		96.3
(3)
P 		95.3
(2.9)
P 		83
(2)
P 		42.2
(-0.9)
P 		83
B 53.4
(-3)
P 		69
(-1.7)
P 		96.9
(0.5)
P 		65.8
(-2)
P 		128.2
(3)
P 		81.8
(-0.7)
P 		75
C 45.9
(-3)
P 		72.4
(-0.7)
P 		51.4
(-2.5)
P 		55.1
(-2.2)
P 		108.6
(2.5)
P 		114
(3)
P 		68
avr 37.5
(-3) 		75.6
(0.3) 		81.5
(0.8) 		72.1
(0) 		106.6
(3) 		79.3
(0.6) 		69
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186356_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4563
Sequence Type Exemplar sequence
Representative Public ID ZC239.16 NCBI
Target Description ZC239.16 /REP_DB=WormBase Gene ID /WP=CE15140 /TR=P91564 /GB=AAB37953.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062081(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062081 NCBI Caenorhabditis elegans ZC239.16 (ZC239.16) mRNA, complete cds. 11/11 None
GENEFINDER00000024308 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3223540:3225280:-1 10/11 None
ZC239.16 ENSEMBL cdna:known chromosome:CEL140:II:3224765:3225280:-1 gene:ZC239.16 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000024299 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3224763-3225279(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC239.16
Entrez Gene 191126 Entrez gene
SwissProt P91564 EMBL-EBI
WormBase CE15140 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6813 potassium ion transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
8076 voltage-gated potassium channel complex inferred from electronic annotation QuickGO AmiGO
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5249 voltage-gated potassium channel activity inferred from electronic annotation QuickGO AmiGO
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB37955 Hypothetical protein ZC239.15 [Caenorhabditis elegans] ref|NP_494481.1| ZC239.15 [Caenorhabditis elegans] 1.0E-83
blast AAB37953 Hypothetical protein ZC239.16 [Caenorhabditis elegans] ref|NP_494482.1| ZC239.16 [Caenorhabditis elegans] 9.0E-68
blast NP_494315 F22E5.8 [Caenorhabditis elegans] gb|AAB66174.2| Hypothetical protein F22E5.8 [Caenorhabditis elegans] 1.0E-64
blast AAB37953 Hypothetical protein ZC239.16 [Caenorhabditis elegans] ref|NP_494482.1| ZC239.16 [Caenorhabditis elegans] 4.0E-56
blast T25980 hypothetical protein ZC239.17 - Caenorhabditis elegans 1.0E-36
blast AAB37956 Hypothetical protein ZC239.14 [Caenorhabditis elegans] ref|NP_494479.1| ZC239.14 [Caenorhabditis elegans] 3.0E-30
Protein Domains
Database ID Description E-Value
Pfam IPR003131 EMBL-EBI K+ channel tetramerisation 3.5E-42
Pfam IPR003131 EMBL-EBI K+ channel tetramerisation 3.5E-23
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494482.1 1 118-140
ZC239.16 1 118-140
Sequence
Target Sequence 
>C. ELEGANS:186356_AT
taacaaagttccatagctttttcaaaactatgttggaatgcaaaactgggccgaaaattg
aaaaaaccggatgcattttcatagatcggtccccgaaacactttgaattgattctgaatt
taatgagagatggtgatctgccactgccagaagatgaaagagagctgagagaattgatgg
cagaagctcaattctactggttggatggtctagtcttaatgtgctgtgataaacttaatt
ctacaaaaaaggtccaaattgatcaaagagcaaacactaaaaaatatgatttatcatggt
tttttgttttttcaataatttttttggttttagtgtttgtgtattacatgcctgcactaa
aaggctattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAACAAAGTTCCATAGCTTTTTCAA 345 639 74 Antisense
GTTGGAATGCAAAACTGGGCCGAAA 704 433 105 Antisense
CGGATGCATTTTCATAGATCGGTCC 680 243 141 Antisense
CCGAAACACTTTGAATTGATTCTGA 630 263 166 Antisense
TGAGAGATGGTGATCTGCCACTGCC 270 569 197 Antisense
GTGATCTGCCACTGCCAGAAGATGA 30 485 206 Antisense
GAAGCTCAATTCTACTGGTTGGATG 276 343 256 Antisense
TCTACTGGTTGGATGGTCTAGTCTT 100 613 266 Antisense
GATGGTCTAGTCTTAATGTGCTGTG 598 407 277 Antisense
TGTGCTGTGATAAACTTAATTCTAC 218 555 293 Antisense
ACATGCCTGCACTAAAAGGCTATTT 274 105 419 Antisense
Sequence Source Affymetrix Proprietary Database