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[186355_at]

Description C16C8.16 /REP_DB=WormBase Gene ID /WP=CE08227 /TR=P91055 /GB=AAB37858.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 73      4grp_total > 09      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 16.6
(-2.1)
A 		10.8
(-2.7)
A 		7
(-3)
A 		72.8
(3)
P 		66
B 3.4
(-3)
A 		24
(0.4)
A 		29.1
(1.2)
A 		40.1
(3)
P 		37
C 4.5
(-3)
A 		10.6
(-2.5)
A 		25.4
(-1.1)
A 		71.4
(3)
P 		67
avr 8.2
(-3) 		15.1
(-2.2) 		20.5
(-1.6) 		61.4
(3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 47.1
(3)
A 		15.5
(-2)
A 		41.8
(2.2)
P 		14.9
(-2.1)
A 		40
(1.9)
A 		9.1
(-3)
A 		38
B 3
(-3)
A 		27.7
(1.6)
A 		26.5
(1.4)
A 		34.9
(3)
A 		14.7
(-0.8)
A 		27.7
(1.6)
P 		32
C 19.6
(-3)
A 		32.9
(-0.5)
P 		40.5
(1)
A 		42.2
(1.3)
P 		51
(3)
P 		39.6
(0.8)
P 		31
avr 23.2
(-3) 		25.4
(-2) 		36.3
(3) 		30.7
(0.4) 		35.2
(2.5) 		25.5
(-1.9) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 6
(-0.2)
A 		2.3
(-2.7)
A 		1.8
(-3)
A 		10.7
(3)
P 		9
B 1.1
(-3)
A 		5.9
(0.8)
A 		6.7
(1.5)
A 		8.6
(3)
P 		8
C 1.5
(-3)
A 		3
(-2.1)
A 		8.9
(1.2)
A 		12
(3)
P 		11
avr 2.9
(-3) 		3.7
(-2.4) 		5.8
(-0.7) 		10.4
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 8.7
(0.9)
A 		5.5
(-1)
A 		9.1
(1.2)
P 		3.8
(-2)
A 		12.1
(3)
A 		2.2
(-3)
A 		10
B 1.1
(-3)
A 		9.2
(2.3)
A 		6.4
(0.5)
A 		9.2
(2.3)
A 		6
(0.2)
A 		10.3
(3)
P 		9
C 7.3
(-3)
A 		10
(-1.2)
P 		10.3
(-1)
A 		8.5
(-2.2)
P 		16.5
(3)
P 		13.3
(0.9)
P 		9
avr 5.7
(-3) 		8.2
(-0.4) 		8.6
(-0) 		7.2
(-1.4) 		11.5
(3) 		8.6
(-0) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186355_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4468
Sequence Type Exemplar sequence
Representative Public ID C16C8.16 NCBI
Target Description C16C8.16 /REP_DB=WormBase Gene ID /WP=CE08227 /TR=P91055 /GB=AAB37858.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062143(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062143 NCBI Caenorhabditis elegans C16C8.16 (C16C8.16) mRNA, complete cds. 11/11 None
C16C8.16 ENSEMBL cdna:known chromosome:CEL140:II:3445760:3448734:1 gene:C16C8.16 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000014778 3/11 Cross Hyb Matching Probes None
SNAP00000014779 8/11 Cross Hyb Matching Probes None
GENEFINDER00000014794 8/11 Cross Hyb Matching Probes None
GENEFINDER00000014799 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3445763-3448733(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C16C8.16
Entrez Gene 173688 Entrez gene
SwissProt P91055 EMBL-EBI
WormBase CE08227 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37858 Hypothetical protein C16C8.16 [Caenorhabditis elegans] ref|NP_494544.1| C16C8.16 [Caenorhabditis elegans] 0.0
blast AAB37856 Hypothetical protein C16C8.14 [Caenorhabditis elegans] ref|NP_494545.1| C16C8.14 [Caenorhabditis elegans] 1.0E-54
blast AAB37855 Hypothetical protein C16C8.13 [Caenorhabditis elegans] ref|NP_494546.1| C16C8.13 [Caenorhabditis elegans] 3.0E-53
Protein Domains
Database ID Description E-Value
Pfam IPR000626 EMBL-EBI Ubiquitin 7.4E-21
Pfam IPR000626 EMBL-EBI Ubiquitin 0.0043
Sequence
Target Sequence 
>C. ELEGANS:186355_AT
agctgctgtgaaagacgtcccaattgaatctggagaattggcaaagaatgactcaatgtt
taagatttttgtttcctggtccattccgggtggcatattcgtgtctgaaaaccgcaggaa
actaccagtgtacgaatcgaacacaattcgacaaatcaaactgcgcatcaattcacttaa
aagtcaagatcagatgaagattcaggaaggagaatttgcgaagaagatcgaagaatcagt
tgcacctgtgaaaacaccgctggaagccccaattgaagataaaaaattggataataaaaa
accatttttcaagattactgtacatttgcatggaggtcctaatgcatccgtatatggaag
aaagtacaatcatctcgtgttcgatgcgcatacgattcgtgatcttaaagtgcggatcaa
ggcacttattatgcagtccagtccaataaaactgagaaccgaattgtacagattgttctt
tgtttatacacttctcgaagaccaccaaactatcgcttattac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCTGCTGTGAAAGACGTCCCAATT 221 81 1239 Antisense
TAAGATTTTTGTTTCCTGGTCCATT 510 637 1299 Antisense
ATTCCGGGTGGCATATTCGTGTCTG 279 9 1321 Antisense
GTTGCACCTGTGAAAACACCGCTGG 202 439 1477 Antisense
CACCGCTGGAAGCCCCAATTGAAGA 98 201 1493 Antisense
GAGGTCCTAATGCATCCGTATATGG 296 403 1571 Antisense
GAAAGTACAATCATCTCGTGTTCGA 197 361 1598 Antisense
GTGTTCGATGCGCATACGATTCGTG 123 485 1615 Antisense
GGCACTTATTATGCAGTCCAGTCCA 582 535 1659 Antisense
GTTCTTTGTTTATACACTTCTCGAA 604 443 1713 Antisense
AGACCACCAAACTATCGCTTATTAC 250 69 1737 Antisense
Sequence Source Affymetrix Proprietary Database