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[186354_at]

Description F55F10.1 /REP_DB=WormBase Gene ID /WP=CE17877 /TR=O61851 /GB=AAC17540.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 50      4grp_total > 47      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 21.5
(3)
A 		5.6
(-2.1)
A 		2.8
(-3)
A 		6
(-2)
A 		19
B 18.9
(3)
A 		8
(-1.8)
A 		8.9
(-1.4)
A 		5.3
(-3)
A 		14
C 9.8
(-0.5)
A 		9.7
(-0.6)
A 		8.2
(-3)
A 		12
(3)
A 		4
avr 16.7
(3) 		7.8
(-2.3) 		6.6
(-3) 		7.8
(-2.3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 7.5
(2.6)
A 		6.1
(0.6)
A 		4.5
(-1.7)
A 		7.8
(3)
A 		3.6
(-3)
A 		5.8
(0.1)
A 		4
B 7.2
(3)
A 		5.9
(0.9)
A 		6.2
(1.4)
A 		4.8
(-0.8)
A 		5.4
(0.2)
A 		3.4
(-3)
A 		4
C 5.6
(-1.4)
A 		6.9
(-0.4)
A 		7.5
(0)
A 		11.5
(3)
A 		3.4
(-3)
A 		6.4
(-0.8)
A 		8
avr 6.8
(1.2) 		6.3
(0.4) 		6.1
(0.1) 		8
(3) 		4.1
(-3) 		5.2
(-1.3) 		4
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 7.8
(3)
A 		1.2
(-2.6)
A 		0.7
(-3)
A 		0.9
(-2.8)
A 		7
B 6
(3)
A 		2
(-1.9)
A 		2.1
(-1.8)
A 		1.1
(-3)
A 		5
C 3.2
(3)
A 		2.8
(1)
A 		2.9
(1.5)
A 		2
(-3)
A 		1
avr 5.7
(3) 		2
(-2) 		1.9
(-2.2) 		1.3
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 1.4
(-1)
A 		2.2
(3)
A 		1
(-3)
A 		2
(2)
A 		1.1
(-2.5)
A 		1.4
(-1)
A 		1
B 2.5
(3)
A 		2
(0.5)
A 		1.5
(-2)
A 		1.3
(-3)
A 		2.2
(1.5)
A 		1.3
(-3)
A 		1
C 2.1
(2)
A 		2.1
(2)
A 		1.9
(1)
A 		2.3
(3)
A 		1.1
(-3)
A 		2.1
(2)
A 		1
avr 2
(2) 		2.1
(3) 		1.5
(-3) 		1.9
(1) 		1.5
(-3) 		1.6
(-2) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186354_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10419
Sequence Type Exemplar sequence
Representative Public ID F55F10.1 NCBI
Target Description F55F10.1 /REP_DB=WormBase Gene ID /WP=CE17877 /TR=O61851 /GB=AAC17540.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068150(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068150 NCBI Caenorhabditis elegans F55F10.1 (F55F10.1) mRNA, complete cds. 11/11 A 
F55F10.1 ENSEMBL cdna:known chromosome:CEL140:IV:4360843:4386515:1 gene:F55F10.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4370706-4376088(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F55F10.1
Entrez Gene 186322 Entrez gene
SwissProt O61851 EMBL-EBI
WormBase CE30377 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
160 two-component signal transduction system (phosphorelay) inferred from electronic annotation QuickGO AmiGO
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
166 nucleotide binding inferred from electronic annotation QuickGO AmiGO
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC17540 Hypothetical protein F55F10.1 [Caenorhabditis elegans] ref|NP_500551.2| F55F10.1 [Caenorhabditis elegans] 0.0
blast CAE58521 Hypothetical protein CBG01673 [Caenorhabditis briggsae] 0.0
blast T33162 hypothetical protein F55F10.2 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 2.3E-5
Sequence
Target Sequence 
>C. ELEGANS:186354_AT
gggcaattcgagacggttctccaatgccacttcagttgaaatctgcagttgtgaggcgtc
ggctcgcggagctcgatgaaaaatcatcaattatcgagattcaatggacacgagcacaat
ggaaaaagtggtacgagaagaatatcgcgaaagctgagcaaaaagattttgtgtatcgaa
caaagacggaagaggagaaggatgagatggatttggaggaattttttgcgaatcatgaac
aagatcatcaggttcagaaaaaaaatcggaaaaaatgttcaaaaaatccgtcaaattatg
ctaacattttaatgaaaatcaaaaaaccgacatttttgattcaggttctgccggattgtg
atgtctcgatgttgttggagtcagtggaacgtaagcgatcatcgttagttgacgagaaaa
gccgaaaaaagtcggacgagcggtacgaaatggcgatggtttggatgagatatgtgatga
gtgaggttggagcaattccgattgatgatgccacgtggagccagtgtattg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGCAATTCGAGACGGTTCTCCAAT 190 493 1883 Antisense
TTCTCCAATGCCACTTCAGTTGAAA 12 687 1899 Antisense
AAATCTGCAGTTGTGAGGCGTCGGC 489 117 1921 Antisense
GTCGGCTCGCGGAGCTCGATGAAAA 117 467 1940 Antisense
GACATTTTTGATTCAGGTTCTGCCG 102 371 2211 Antisense
GGTTCTGCCGGATTGTGATGTCTCG 391 507 2226 Antisense
GATGTCTCGATGTTGTTGGAGTCAG 504 409 2242 Antisense
GTCAGTGGAACGTAAGCGATCATCG 394 467 2262 Antisense
GGACGAGCGGTACGAAATGGCGATG 705 521 2316 Antisense
GTGAGGTTGGAGCAATTCCGATTGA 446 481 2363 Antisense
GATGCCACGTGGAGCCAGTGTATTG 431 415 2389 Antisense
Sequence Source Affymetrix Proprietary Database