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[186353_at]

Description F22E5.15 /REP_DB=WormBase Gene ID /WP=CE09567 /TR=O16717 /GB=AAB66178.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 12      6grp_cgc > 96      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 183
1 2 3 4 range
A 43.8
(-1.4)
A 		19.2
(-2.4)
A 		4.5
(-3)
A 		147.6
(3)
P 		143
B 65.8
(-0.4)
A 		57.5
(-3)
A 		58.1
(-2.8)
A 		77
(3)
P 		20
C 56.1
(-1.3)
A 		59.4
(-1.2)
A 		3.8
(-3)
A 		186.6
(3)
P 		183
avr 55.2
(-1.3) 		45.4
(-1.8) 		22.1
(-3) 		137.1
(3) 		115

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 47
(-0.3)
A 		32.2
(-2.2)
A 		72.6
(3)
A 		26.2
(-3)
A 		68.2
(2.4)
M 		49.4
(0)
A 		46
B 43.5
(-1)
A 		50.9
(0.3)
A 		32.8
(-3)
A 		65.3
(3)
A 		46.8
(-0.4)
A 		36.6
(-2.3)
A 		33
C 59.5
(1.4)
A 		79.5
(3)
P 		3.3
(-3)
A 		78.1
(2.9)
A 		26.4
(-1.2)
A 		36.3
(-0.4)
A 		76
avr 50
(1.1) 		54.2
(2.3) 		36.2
(-3) 		56.5
(3) 		47.1
(0.2) 		40.8
(-1.6) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 16
(1.4)
A 		4.2
(-2.1)
A 		1.2
(-3)
A 		21.6
(3)
P 		20
B 21
(3)
A 		14.2
(-2.4)
A 		13.5
(-3)
A 		16.4
(-0.7)
P 		8
C 18.6
(0.4)
A 		17.1
(0.1)
A 		1.3
(-3)
A 		31.5
(3)
P 		30
avr 18.5
(1.4) 		11.8
(-0.8) 		5.3
(-3) 		23.2
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 8.7
(-2.1)
A 		11.5
(-0.9)
A 		15.8
(0.9)
A 		6.6
(-3)
A 		20.6
(3)
M 		12
(-0.7)
A 		14
B 15.2
(0.9)
A 		17
(1.9)
A 		8
(-3)
A 		17.3
(2.1)
A 		19
(3)
A 		13.7
(0.1)
A 		11
C 22
(2.4)
A 		24.3
(3)
P 		0.8
(-3)
A 		15.7
(0.8)
A 		8.5
(-1)
A 		12.1
(-0.1)
A 		24
avr 15.3
(1.5) 		17.6
(3) 		8.2
(-3) 		13.2
(0.2) 		16
(2) 		12.6
(-0.2) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186353_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4425
Sequence Type Exemplar sequence
Representative Public ID F22E5.15 NCBI
Target Description F22E5.15 /REP_DB=WormBase Gene ID /WP=CE09567 /TR=O16717 /GB=AAB66178.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000023621 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2666297:2668262:-1 11/11 None
F22E5.15 ENSEMBL cdna:pseudogene chromosome:CEL140:II:2666284:2668163:-1 gene:F22E5.15 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000006771 2/11 Cross Hyb Matching Probes None
GENEFINDER00000006783 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3187376-3191101(+) 95.31 97.2
chrII:2666387-2670006(-) 98.12 100.0
Public Domain and Genome References
Ensembl F22E5.15
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T32076 hypothetical protein F22E5.15 - Caenorhabditis elegans 1.0E-164
blast AAC68719 Serpentine receptor, class i protein 54 [Caenorhabditis elegans] ref|NP_494456.2| Serpentine Receptor, class I family member (sri-54) [Caenorhabditis elegans] 1.0E-103
blast CAE72397 Hypothetical protein CBG19555 [Caenorhabditis briggsae] 3.0E-90
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 7.6E-71
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000023621 7 47-69,81-103,123-145,165-187,228-250,271-300,305-327
Sequence
Target Sequence 
>C. ELEGANS:186353_AT
ttgattctcatgtttgcctatttcccagcctacaccgtcagtgtcgcaagcatttattcc
aggctcagtgttccggaaactttgaaatttggatttgtagccactacgtaccccgacctg
ttacccgagttcaagtctcttcccaacttttccatctacgatttctccgtgcattttaaa
attttcataatctacgcaatcaccgggggatctattggatttattgttttcagcttagtc
ttattaaatattatccgtatgctcagccagctcagactgaaaatctcaaagtcaaactac
caaaagcaccggaacgcaatttggagcctgttggctcaatttgcaacgtcatcgacaatt
tttctaccgccaattgtatgtagttttgtcattttgctggggtttaatgggtctcaagta
atcgtagaaacatttctggtacttgcctgtcttcattctttgctcaatgtattggttctc
gtggtcacctgcccgccttataggaaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGATTCTCATGTTTGCCTATTTCC 374 707 1453 Antisense
CACCGTCAGTGTCGCAAGCATTTAT 357 201 1485 Antisense
ATTTATTCCAGGCTCAGTGTTCCGG 370 15 1504 Antisense
TGGATTTGTAGCCACTACGTACCCC 76 549 1542 Antisense
GACCTGTTACCCGAGTTCAAGTCTC 86 379 1567 Antisense
CCATCTACGATTTCTCCGTGCATTT 148 271 1604 Antisense
AATCTACGCAATCACCGGGGGATCT 124 167 1641 Antisense
GCACCGGAACGCAATTTGGAGCCTG 480 313 1758 Antisense
CGTCATCGACAATTTTTCTACCGCC 612 245 1799 Antisense
GAAACATTTCTGGTACTTGCCTGTC 697 355 1879 Antisense
TCACCTGCCCGCCTTATAGGAAATT 108 627 1937 Antisense
Sequence Source Affymetrix Proprietary Database