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[186352_at]

Description T19D12.7 /REP_DB=WormBase Gene ID /WP=CE04982 /TR=Q22575 /GB=AAC24427.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 4grp_highest_8_8 > 60      4grp_high_8_8 > 26      6grp_total > 17      4grp_total > 37      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 266
1 2 3 4 range
A 402.9
(3)
P 		253.6
(-0.8)
P 		170.1
(-3)
P 		266.8
(-0.5)
P 		233
B 380.6
(3)
P 		265.3
(-0.1)
P 		157.9
(-3)
P 		248.2
(-0.6)
P 		223
C 333.6
(3)
P 		306.3
(2.2)
P 		137.4
(-3)
P 		263
(0.8)
P 		196
avr 372.4
(3) 		275.1
(0.3) 		155.1
(-3) 		259.3
(-0.1) 		217

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 210
1 2 3 4 5 6 range
A 214.4
(3)
P 		171.2
(1.2)
P 		121.7
(-0.9)
P 		74.2
(-2.9)
A 		72.8
(-3)
A 		104.3
(-1.7)
A 		142
B 169.9
(3)
P 		134.8
(0.9)
P 		84.7
(-2.1)
P 		108.1
(-0.7)
P 		69.9
(-3)
A 		87
(-2)
P 		100
C 280.2
(3)
P 		148.5
(-1.3)
P 		122.6
(-2.2)
P 		109.4
(-2.6)
M 		97
(-3)
A 		99.1
(-2.9)
P 		183
avr 221.5
(3) 		151.5
(0) 		109.7
(-1.7) 		97.2
(-2.3) 		79.9
(-3) 		96.8
(-2.3) 		142
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 110
1 2 3 4 range
A 146.7
(3)
P 		55
(-2.1)
P 		44.5
(-2.7)
P 		39.1
(-3)
P 		108
B 121.4
(3)
P 		65.5
(-1)
P 		36.6
(-3)
P 		52.9
(-1.8)
P 		85
C 110.4
(3)
P 		88.1
(1)
P 		47.9
(-2.7)
P 		44.3
(-3)
P 		66
avr 126.2
(3) 		69.5
(-1.1) 		43
(-3) 		45.4
(-2.8) 		83

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 39.5
(-0)
P 		60.9
(3)
P 		26.5
(-1.9)
P 		18.8
(-3)
A 		22
(-2.5)
A 		25.4
(-2.1)
A 		42
B 59.1
(3)
P 		44.9
(0.8)
P 		20.6
(-3)
P 		28.6
(-1.8)
P 		28.4
(-1.8)
A 		32.4
(-1.2)
P 		39
C 103.9
(3)
P 		45.3
(-1.3)
P 		31.2
(-2.3)
P 		22
(-3)
M 		31.4
(-2.3)
A 		33.2
(-2.2)
P 		82
avr 67.5
(3) 		50.4
(0.7) 		26.1
(-2.6) 		23.1
(-3) 		27.3
(-2.4) 		30.3
(-2) 		44
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186352_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5797
Sequence Type Exemplar sequence
Representative Public ID T19D12.7 NCBI
Target Description T19D12.7 /REP_DB=WormBase Gene ID /WP=CE04982 /TR=Q22575 /GB=AAC24427.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062950(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062950 NCBI Caenorhabditis elegans T19D12.7 (T19D12.7) mRNA, complete cds. 11/11 None
SNAP00000003085 ENSEMBL cdna:SNAP chromosome:CEL140:II:6647560:6648843:-1 10/11 None
GENEFINDER00000003094 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6647560:6648843:-1 11/11 None
T19D12.7 ENSEMBL cdna:known chromosome:CEL140:II:6647121:6649580:-1 gene:T19D12.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6647556-6649577(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T19D12.7
Entrez Gene 188609 Entrez gene
SwissProt Q22575 EMBL-EBI
WormBase CE04982 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC24427 Hypothetical protein T19D12.7 [Caenorhabditis elegans] ref|NP_495351.1| T19D12.7 [Caenorhabditis elegans] 0.0
blast AAC24427 Hypothetical protein T19D12.7 [Caenorhabditis elegans] ref|NP_495351.1| T19D12.7 [Caenorhabditis elegans] 1.0E-147
blast AAC24427 Hypothetical protein T19D12.7 [Caenorhabditis elegans] ref|NP_495351.1| T19D12.7 [Caenorhabditis elegans] 1.0E-121
blast CAE60676 Hypothetical protein CBG04329 [Caenorhabditis briggsae] 1.0E-120
blast CAE60676 Hypothetical protein CBG04329 [Caenorhabditis briggsae] 1.0E-102
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495351.1 2 12-34,379-398
T19D12.7 2 12-34,379-398
SNAP00000003085 1 236-255
GENEFINDER00000003094 1 270-289
Sequence
Target Sequence 
>C. ELEGANS:186352_AT
tgttgtatccgttcaactgacctcgcatatcagtcattcgtttgttatagtactctactg
actgttgttgatgaaatgcctggagatggtatgaatgaaacagcaactactgaagctcca
ccatccccttcgtggaacgtcgtgattgaagacggagaaattttgaacgcacaaccagaa
aataactactttttgaaaattttcgaagataatgtgacggcaatacattgtcttgtcaac
gaagtggaaattaatattaaaactgtaagtctagctgacctgagtaattcgttcacccca
ccattatacaatgacgtgctcatccaatcattcaatcttactgatcatagtggcatatac
gtctgcaatggaacccttcaaatcggaaatgaaacttcaattgaaactgtcacattcact
gtctctcaatcatgggatgacaacaagaacgccgatttgctggattcaaaagtcgtggcc
gaagctctcaaaactgcattcactgtcttttcct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTTGTATCCGTTCAACTGACCTCG 238 563 655 Antisense
ACCTCGCATATCAGTCATTCGTTTG 52 89 674 Antisense
AACAGCAACTACTGAAGCTCCACCA 139 137 753 Antisense
TCCCCTTCGTGGAACGTCGTGATTG 31 597 778 Antisense
CTGACCTGAGTAATTCGTTCACCCC 114 239 929 Antisense
ATGACGTGCTCATCCAATCATTCAA 454 45 965 Antisense
TATACGTCTGCAATGGAACCCTTCA 60 659 1010 Antisense
ATTCACTGTCTCTCAATCATGGGAT 402 11 1068 Antisense
AAGAACGCCGATTTGCTGGATTCAA 9 25 1099 Antisense
GTGGCCGAAGCTCTCAAAACTGCAT 73 493 1129 Antisense
AAAACTGCATTCACTGTCTTTTCCT 172 131 1144 Antisense
Sequence Source Affymetrix Proprietary Database