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[186350_at]

Description Y49E10.15 /REP_DB=WormBase Gene ID /WP=CE22230 /TR=Q9XTU6 /GB=CAB11551.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 86      6grp_high1_10_10 > 76      4grp_highest_8_8 > 09      4grp_high_8_8 > 62      6grp_highest_nonorm > 68      6grp_total > 67      4grp_total > 58      6grp_highest_sub > Da      6grp_cgc > 48      6grp_high1_sub > Da      6grp_cgc_sub > Da      6grp_total_sub > Increase      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1708
1 2 3 4 range
A 1997.6
(-1.1)
P 		3137.7
(3)
P 		3025.2
(2.6)
P 		1465.8
(-3)
P 		1672
B 2188.4
(-1.2)
P 		2529.9
(0.2)
P 		3173.5
(3)
P 		1773.8
(-3)
P 		1400
C 2050.7
(-0.9)
P 		2703.7
(2)
P 		2926
(3)
P 		1586.3
(-3)
P 		1340
avr 2078.9
(-1) 		2790.4
(1.9) 		3041.6
(3) 		1608.6
(-3) 		1433

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1260
1 2 3 4 5 6 range
A 2013.6
(0.5)
P 		1847.1
(-1.2)
P 		1925.3
(-0.4)
P 		1670.8
(-3)
P 		1987.2
(0.3)
P 		2251.9
(3)
P 		581
B 1958.6
(-2)
P 		2199.1
(-0.7)
P 		2353.4
(0.1)
P 		1761.1
(-3)
P 		2176.7
(-0.8)
P 		2910.1
(3)
P 		1149
C 1650.4
(-3)
P 		1995.1
(-1.3)
P 		1697.4
(-2.8)
P 		1856.7
(-2)
P 		1817.6
(-2.2)
P 		2895.5
(3)
P 		1245
avr 1874.2
(-2.3) 		2013.8
(-1.4) 		1992
(-1.5) 		1762.9
(-3) 		1993.8
(-1.5) 		2685.8
(3) 		923
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 805
1 2 3 4 range
A 727.3
(2.3)
P 		681.1
(1.9)
P 		790.9
(3)
P 		214.6
(-3)
P 		576
B 697.9
(2.4)
P 		624.8
(1.1)
P 		735.4
(3)
P 		378
(-3)
P 		357
C 678.8
(0.3)
P 		777.3
(1.1)
P 		1019.8
(3)
P 		267.5
(-3)
P 		752
avr 701.3
(1.4) 		694.4
(1.4) 		848.7
(3) 		286.7
(-3) 		562

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 714
1 2 3 4 5 6 range
A 371.2
(-3)
P 		656.9
(3)
P 		419.3
(-2)
P 		423.8
(-1.9)
P 		599.6
(1.8)
P 		548.3
(0.7)
P 		286
B 681.5
(-0.9)
P 		732
(-0.4)
P 		571.5
(-2)
P 		466.5
(-3)
P 		884.4
(1.1)
P 		1085.2
(3)
P 		619
C 611.7
(-0.6)
P 		608.8
(-0.6)
P 		432
(-2.4)
P 		373.4
(-3)
P 		588.2
(-0.8)
P 		969.3
(3)
P 		596
avr 554.8
(-1.2) 		665.9
(0.3) 		474.3
(-2.3) 		421.2
(-3) 		690.7
(0.6) 		867.6
(3) 		446
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186350_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7636
Sequence Type Exemplar sequence
Representative Public ID Y49E10.15 NCBI
Target Description Y49E10.15 /REP_DB=WormBase Gene ID /WP=CE22230 /TR=Q9XTU6 /GB=CAB11551.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067219(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067219 NCBI Caenorhabditis elegans Small Nuclear Ribonucleoprotein family member (snr-6) (snr-6) mRNA, complete cds. 11/11 None
SNAP00000016082 ENSEMBL cdna:SNAP chromosome:CEL140:III:12429170:12433582:-1 9/11 None
GENEFINDER00000016107 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12429170:12429489:-1 11/11 None
Y49E10.15 ENSEMBL cdna:known chromosome:CEL140:III:12429170:12429489:-1 gene:Y49E10.15 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12429165-12429485(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol snr-6
Ensembl Y49E10.15
Entrez Gene 176668 Entrez gene
SwissProt Q9XTU6 EMBL-EBI
WormBase CE22230 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:13472_AT small nuclear ribonucleoprotein E, putative / snRNP-E, putative / Sm protein E, putative at
ATH1-121501:266074_AT small nuclear ribonucleoprotein E, putative / snRNP-E, putative / Sm protein E, putative at
CANINE:1585438_AT similar to small nuclear ribonucleoprotein E cfa
CANINE_2:CFA.6533.1.A1_AT similar to small nuclear ribonucleoprotein E cfa
CANINE_2:CFAAFFX.21198.1.S1_AT similar to small nuclear ribonucleoprotein E cfa
CANINE_2:CFAAFFX.4042.1.S1_X_AT similar to small nuclear ribonucleoprotein E cfa
DROSOPHILA_2:1623250_AT dm
DROSGENOME1:145993_AT dm
CHICKEN:GGA.3409.2.S1_A_AT Small nuclear ribonucleoprotein polypeptide E gga
CHICKEN:GGA.3409.3.S1_AT Small nuclear ribonucleoprotein polypeptide E gga
HG-U133_PLUS_2:231112_AT small nuclear ribonucleoprotein polypeptide E hs
HG-U133B:231112_AT small nuclear ribonucleoprotein polypeptide E hs
HG-U133A:203316_S_AT small nuclear ribonucleoprotein polypeptide E hs
HG-U133_PLUS_2:203316_S_AT small nuclear ribonucleoprotein polypeptide E hs
HG-U133A_2:203316_S_AT small nuclear ribonucleoprotein polypeptide E hs
HG-FOCUS:203316_S_AT small nuclear ribonucleoprotein polypeptide E hs
HU35KSUBC:RC_C14070_AT small nuclear ribonucleoprotein polypeptide E hs
HUGENEFL:M21259_AT small nuclear ribonucleoprotein polypeptide E hs
U133_X3P:G4507128_3P_X_AT small nuclear ribonucleoprotein polypeptide E hs
U133_X3P:G4507128_3P_A_AT small nuclear ribonucleoprotein polypeptide E hs
U133_X3P:HS.1066.1.A1_3P_AT small nuclear ribonucleoprotein polypeptide E hs
HG-U95AV2:38678_AT small nuclear ribonucleoprotein polypeptide E hs
HG-U95AV2:38679_G_AT small nuclear ribonucleoprotein polypeptide E hs
HG-U95E:82273_AT small nuclear ribonucleoprotein polypeptide E hs
MOUSE430A_2:1451294_S_AT small nuclear ribonucleoprotein E mm
MOE430A:1451294_S_AT small nuclear ribonucleoprotein E mm
MOUSE430_2:1451294_S_AT small nuclear ribonucleoprotein E mm
MU11KSUBB:X65704_F_AT small nuclear ribonucleoprotein E mm
MU11KSUBB:MSA.2664.0_S_AT small nuclear ribonucleoprotein E mm
MG-U74AV2:97200_F_AT small nuclear ribonucleoprotein E mm
RG-U34A:RC_AA875102_AT similar to small nuclear ribonucleoprotein E rn
RAE230A:1372333_AT similar to small nuclear ribonucleoprotein E rn
RAT230_2:1372333_AT similar to small nuclear ribonucleoprotein E rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6397 mRNA processing inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
5732 small nucleolar ribonucleoprotein complex inferred from electronic annotation QuickGO AmiGO
30529 ribonucleoprotein complex inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB11551 Hypothetical protein Y49E10.15 [Caenorhabditis elegans] ref|NP_499620.1| Small Nuclear Ribonucleoprotein family member (snr-6) [Caenorhabditis elegans] sp|Q9XTU6|RUXE_CAEEL Probable small nuclear ribonucleoprotein E (snRNP-E) (Sm protein E) (Sm-E) (SmE) 3.0E-45
blast CAE66477 Hypothetical protein CBG11756 [Caenorhabditis briggsae] 6.0E-43
blast CAB11551 Hypothetical protein Y49E10.15 [Caenorhabditis elegans] ref|NP_499620.1| Small Nuclear Ribonucleoprotein family member (snr-6) [Caenorhabditis elegans] sp|Q9XTU6|RUXE_CAEEL Probable small nuclear ribonucleoprotein E (snRNP-E) (Sm protein E) (Sm-E) (SmE) 3.0E-35
blast CAE66477 Hypothetical protein CBG11756 [Caenorhabditis briggsae] 1.0E-34
blast AAH72956 MGC82471 protein [Xenopus laevis] 1.0E-28
Protein Domains
Database ID Description E-Value
Pfam IPR001163 EMBL-EBI Small nuclear ribonucleoprotein (Sm protein) 1.7E-16
Pfam IPR001163 EMBL-EBI Small nuclear ribonucleoprotein (Sm protein) 2.3E-16
Sequence
Target Sequence 
>C. ELEGANS:186350_AT
acaaagtgatggttcagcctgtgaacctcatcttcagatatctccaaaaccgcactcggg
tccaaatctggttgtacgaggatgtcacccaccgtctcgagggctacatcatcggattcg
acgagttcatgaatgtcgtgttcgacgaagccgaggaggtgaacatgaagacgaagggac
gcaacaagatcggcagaattcttctcaaagga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAAAGTGATGGTTCAGCCTGTGAA 441 111 32 Antisense
GCCTGTGAACCTCATCTTCAGATAT 250 283 48 Antisense
CAAAACCGCACTCGGGTCCAAATCT 587 183 76 Antisense
ACTCGGGTCCAAATCTGGTTGTACG 469 91 85 Antisense
TGGTTGTACGAGGATGTCACCCACC 47 551 100 Antisense
ACCGTCTCGAGGGCTACATCATCGG 147 89 122 Antisense
ACATCATCGGATTCGACGAGTTCAT 188 103 137 Antisense
GAGTTCATGAATGTCGTGTTCGACG 192 397 154 Antisense
CGTGTTCGACGAAGCCGAGGAGGTG 691 243 168 Antisense
GAAGACGAAGGGACGCAACAAGATC 608 339 198 Antisense
GATCGGCAGAATTCTTCTCAAAGGA 270 419 219 Antisense
Sequence Source Affymetrix Proprietary Database